Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq1322 118 1e-21 >seq1322 Length=110664 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 173248 CAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAATTAG 173307 |||| ||| | ||||| |||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 81367 CAGGCGTTATCCCAGTTATGAAAATTCTTGAAGATTCATTTTCATATGCTAATCAACTAG 81308 Query 173308 GACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAAGAAT 173367 | ||| | | ||||||||| || | |||| | ||| | ||| ||||| || || Sbjct 81307 GTCAAAGACAAGGTGCTGGGGCAGTTTATTTAAATGTTCATCATCCAGATATTATGTTAT 81248 Query 173368 TTCTAGATTCTAA----GAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCG 173423 || ||||||| || |||||| || || |||||| ||| ||||||| | || Sbjct 81247 TTTTAGATTCAAAGCGTGAAAAT----GCAGATGAAAAAATTCGTATTAAATCAATGTCT 81192 Query 173424 TTAGGTGTTATCGTTCCTGACA--AATTCATGGAATTAGCTGAGAAGGATGAAC 173475 ||||| || | ||||||| | | || | |||||||| | || |||||| Sbjct 81191 TTAGGAGTAGTTATTCCTGATATTACTT--TTGAATTAGCAAAAAACAATGAAC 81140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701845063998720