Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq1699 93.3 9e-14 >seq1699 Length=35561 Score = 93.3 bits (102), Expect = 9e-14 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 48484 TAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAG 48543 ||| |||||| | |||| || ||||| || |||||||| | ||| ||||||| Sbjct 4583 TAATTGCTGGCGCTAAATTCCAAGGTGAGTTTGAAGAACGATTAAAAGCGGTTATTAACC 4642 Query 48544 AACTTAAAAAA-CGA--GAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48600 || ||||||| | | | ||| | ||||| || ||||||||| ||||| | || | | Sbjct 4643 AAATTAAAAATTCTAATGGAAAAATTATTTTATTTATTGATGAACTACATTTAATTGTTG 4702 Query 48601 GTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTT 48660 |||||||| | | || | || || |||||| ||| | | ||||| | Sbjct 4703 GTGCTGGTAGAA-CACAA--GGTTCAATGGATGCTTCTAATTTACTAAAACCAATGTTAG 4759 Query 48661 CACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48720 |||| ||||| | ||| ||| ||||| ||||| ||| |||||||| || |||||| Sbjct 4760 CACGCGGTGAACTACGTTGTATTGGTGCCACAACACTTGACGAATATCGTCAATACATTG 4819 Query 48721 AAAAAGATGCTGC 48733 |||||||||| || Sbjct 4820 AAAAAGATGCAGC 4832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106429587259712