Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq188 154 3e-32 seq255 149 1e-30 seq771 129 1e-24 >seq188 Length=1630868 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 ||||||| ||| | |||| ||||| |||||||||||| ||||| |||| ||| Sbjct 123859 AGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCC 123800 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | |||||||| ||||| || || ||||| ||||| || || |||||||| |||||| Sbjct 123799 TCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123740 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| ||||| |||| ||| || || || | |||||||| || || || || Sbjct 123739 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 123680 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || ||||| |||||| Sbjct 123679 TTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123647 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||||||| | || | || || ||| || || || || | || | | Sbjct 123178 CGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCA 123119 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 123118 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTA 123059 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||||| |||| ||| || || || | |||||||| || || || Sbjct 123058 TCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATG 122999 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || || ||||| |||||| Sbjct 122998 GTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||||||| | || | || || ||| || || || || | || | | Sbjct 123406 CGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCA 123347 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 123346 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTA 123287 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||||| |||| ||| || || || | |||||||| || || || Sbjct 123286 TCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATG 123227 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || || ||||| |||||| Sbjct 123226 GTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||||||| | || | || || ||| || || || || | || | | Sbjct 123634 CGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCA 123575 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 123574 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTA 123515 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||||| |||| ||| || || || | |||||||| || || || Sbjct 123514 TCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATG 123455 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || || ||||| |||||| Sbjct 123454 GTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 118 bits (130), Expect = 2e-21 Identities = 176/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||||||| | || | || || ||| || || || || | || | | Sbjct 122950 CGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCA 122891 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 122890 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTA 122831 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||||| |||| ||| ||||| || | |||||| || || || || Sbjct 122830 TCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATG 122771 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT--TTTATTAGTAAAATAATTATTTT 193383 || || || || | || || || || || ||||| |||| | |||||| || ||||| Sbjct 122770 GTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGATTTACT-GTAAAA-AAAAATTTT 122713 Query 193384 AAATAA 193389 |||| Sbjct 122712 CCATAA 122707 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || || ||||| || || || || ||||||||||| Sbjct 124030 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTG 123971 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | |||| || || ||||| | ||||||||| || || || Sbjct 123970 TCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATC 123911 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || |||| |||||| ||||| || |||||| Sbjct 123910 GTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 >seq255 Length=939575 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| || ||||| ||||| |||||||||| || | || | ||||| |||||| Sbjct 828460 AAGTTAGATTCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATT 828401 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||| || || || | ||||| ||||| ||||||| | ||||| Sbjct 828400 ATAATCAGAAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTG 828341 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||| || || ||||| | ||| | |||| ||| ||||| || Sbjct 828340 ATCAGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGA 828281 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| |||||||| || || || || || || || || ||||| Sbjct 828280 AGCTTCAACTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | |||||| || | || | |||| || || || || |||||| Sbjct 827831 ATACCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 827772 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || || || || | |||||| || ||||| || || | || ||||| ||| Sbjct 827771 GAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 827712 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || || | ||| | |||| ||||||||| |||| || Sbjct 827711 GGAATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCG 827652 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| ||||||| || || ||||| || ||||| Sbjct 827651 ACTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 >seq771 Length=410761 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||||||||| || | | ||| || | || || || || || || | | | Sbjct 282896 ATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGC 282955 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || ||||| |||||||| || |||| || | |||| |||||| Sbjct 282956 TGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCTATAGTA 283015 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| |||||| || || || || || || || ||||| || || ||||| || ||| Sbjct 283016 TCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGC 283075 Query 193359 ATTT 193362 |||| Sbjct 283076 ATTT 283079 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||||||||| || | | ||| || | || || || || || || | | | Sbjct 280049 ATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGC 280108 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || ||||| || ||||| || |||| |||| |||| ||||||| Sbjct 280109 TGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTTCAATAGTA 280168 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| |||||| || || || ||||| || || ||||| || || || || || ||| Sbjct 280169 TCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGAAGATCTGC 280228 Query 193359 ATT 193361 ||| Sbjct 280229 ATT 280231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899632178536320