Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq255 136 6e-27 seq211 122 1e-22 seq236 91.5 2e-13 >seq255 Length=939575 Score = 136 bits (150), Expect = 6e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || || |||||||| || || | |||||||||| ||| Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||| || ||||||||||||||||| |||||||| || Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || |||||||| ||| || | || || || | Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACA-- 827779 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| || | || ||||| ||||| Sbjct 827780 ACATCCAAAAGGAATCTACTCTTCACTTAGT 827810 Score = 132 bits (146), Expect = 7e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||| ||||| |||||||||||||| |||| ||| Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||||| ||||| ||||||||||| |||||||| || Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || |||||||| ||| || | || || || | Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACA-- 828007 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| || | || ||||| ||||| Sbjct 828008 ACATCCAAAAGGAATCTACTCTTCACTTAGT 828038 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || |||||||| || || | || || |||| ||| Sbjct 827374 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCC 827433 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || || || || || ||||||||||| || || || || Sbjct 827434 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAG 827493 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || |||||||| |||||| ||||| | || ||||| ||| Sbjct 827494 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAAT 827553 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || ||||| | ||||||||||| || || ||| Sbjct 827554 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGA 827589 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| |||||||| || | ||||| |||| ||| Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| || || ||||||||||| || || || ||| Sbjct 828284 GATACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAA 828343 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||||| || ||||| || || || || | || ||||||||| Sbjct 828344 CAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAAT 828403 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 828404 ATTCAGAAAGAATCAACCCTTCACTTGGT 828432 >seq211 Length=255845 Score = 122 bits (134), Expect = 1e-22 Identities = 275/414 (66%), Gaps = 4/414 (1%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 ||||||||||| ||||||||||| || || || | || ||||| ||||| | ||| || Sbjct 252222 TCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCTTC 252163 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 |||||||| || | |||||||||| | ||||| || || || || |||||||| Sbjct 252162 AGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACGCA 252103 Query 18302 ATTAATCTTTCAGCAAAACT--GTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTC 18359 || | | ||| |||||| | | | | ||| | ||||| ||| ||||| | Sbjct 252102 ATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAA--ATCCAATTTAAGGCCCAATTGG 252045 Query 18360 CTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGG 18419 ||| | || || | | |||| || ||||| || | | ||| | |||| || Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 18420 AATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAG 18479 || | || | |||| || | | ||||||||||| || |||| |||| || | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 18480 CTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTT 18539 |||| ||||||| ||| || | | || || | ||| | || | || | || Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 18540 CTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACAT 18593 |||| | ||||||||| || ||||| || | | ||| ||||| ||||| |||| Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACAT 251811 >seq236 Length=119964 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/221 (70%), Gaps = 14/221 (6%) Strand=Plus/Plus Query 25892 TACGAGTATTTTATCACCTTGGTTGCATTGTGGGATGATATCATCGCAAAGATGTGTTTT 25951 ||| || | ||| || || ||||| |||| ||| |||||||| || ||||| |||| Sbjct 39529 TACAAGCAATTTGTCTCCATGGTTTCATTTTGGTATGATATCCGTTCAGCGATGTATTTT 39588 Query 25952 GGAATTATTAAAATTAGaaaaaaaTGAAT-------CTATAGACGCATATATAGAAGAAA 26004 ||| ||||||||| | ||| ||||| || || | || ||| ||| |||||| Sbjct 39589 AGAAGTATTAAAAT-ACAAACAAATGTATAAAGAGTCTGTGGAAACATTTATGGAAGAAG 39647 Query 26005 TATTTGTGAGAAAGGAATTAGCCGATAATTTTTGCTATTATAATAAAAATTATAAATCAA 26064 | ||||||||| |||||| |||||||||||| | | ||| |||| || | | Sbjct 39648 CAATTGTGAGAAGAGAATTAAGCGATAATTTTTGTTTCAACAATGAAAAGTACGATGCTG 39707 Query 26065 TAGAATCTTGTCCTAAT---TGGGCAATTACTACTTTAGAT 26102 ||||| || | ||| ||||||||| ||||||| || Sbjct 39708 TAGAA---GGTGCCAATCAATGGGCAATTGATACTTTAAAT 39745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731853922761600