Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq188 159 6e-34 seq255 131 3e-25 seq211 107 3e-18 >seq188 Length=1630868 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| |||||||| | ||||| || | ||| | ||||| ||||| || ||||| Sbjct 124558 CCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAG 124499 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || ||| | || || | ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 124498 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 124439 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| ||||| |||||| || ||||| ||| || || |||| || ||| Sbjct 124438 ATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACT 124379 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||||||||| ||||||| || ||||||||| Sbjct 124378 TCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | | ||| ||||| | ||||| ||||| ||||||||| || Sbjct 123877 ATTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCA 123818 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || || | ||||| |||||||| || || ||||| || || ||| Sbjct 123817 GATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGT 123758 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| ||||||||| || || ||||| | ||| Sbjct 123757 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 123698 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || || || | || || | ||||||||||||| Sbjct 123697 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123647 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | | ||| ||||| | ||||| ||||| |||||| || || Sbjct 124333 ATTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCA 124274 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || || | ||||| |||||||| || || ||||| || || ||| Sbjct 124273 GATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGT 124214 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| ||||||||| || || ||||| | ||| Sbjct 124213 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 124154 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || || || | || || | ||||||||||||| Sbjct 124153 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 124103 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || || |||| || | ||| || |||||||| || || || Sbjct 124058 AATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCT 123999 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| ||||||||||| ||||| |||||| || ||||| ||| || Sbjct 123998 CTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGT 123939 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | || ||||| || || || ||||| |||||||| ||||||| || ||||| Sbjct 123938 GTCGGATGCCTCAACTTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTG 123879 Query 172067 CATT 172070 |||| Sbjct 123878 CATT 123875 Score = 120 bits (132), Expect = 5e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || ||| | || || | ||| || |||||||| || || || Sbjct 123146 AATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCT 123087 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| |||||||| |||||||| ||||| ||||||||| || || Sbjct 123086 CTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGT 123027 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | ||| ||||| || || ||||| || || || | || || | ||||||||| Sbjct 123026 GTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTG 122967 Query 172067 CATT 172070 |||| Sbjct 122966 CATT 122963 Score = 120 bits (132), Expect = 5e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || ||| | || || | ||| || |||||||| || || || Sbjct 123374 AATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCT 123315 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| |||||||| |||||||| ||||| ||||||||| || || Sbjct 123314 CTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGT 123255 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | ||| ||||| || || ||||| || || || | || || | ||||||||| Sbjct 123254 GTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTG 123195 Query 172067 CATT 172070 |||| Sbjct 123194 CATT 123191 Score = 120 bits (132), Expect = 5e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || ||| | || || | ||| || |||||||| || || || Sbjct 123602 AATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCT 123543 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| |||||||| |||||||| ||||| ||||||||| || || Sbjct 123542 CTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGT 123483 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | ||| ||||| || || ||||| || || || | || || | ||||||||| Sbjct 123482 GTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTG 123423 Query 172067 CATT 172070 |||| Sbjct 123422 CATT 123419 >seq255 Length=939575 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| | ||||| || | ||||| || || || || || || Sbjct 827831 ATACCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 827772 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | |||| || | ||||||||||||||| || || | || || || || Sbjct 827771 GAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 827712 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| ||| ||||| ||||||||||| | ||| Sbjct 827711 GGAATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCG 827652 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| |||||||| || ||||| || |||| || |||||||| Sbjct 827651 ACTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | |||||| | ||||| || | ||||| || || || || || || Sbjct 828059 ATGCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 828000 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | |||| || | ||||||||||||||| || || | || || || || Sbjct 827999 GAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 827940 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || ||||| || |||||||| | |||| Sbjct 827939 GGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCT 827880 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||||||||| ||||| | ||||| | ||| |||||||| Sbjct 827879 ACTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || | || | ||| || || | || | ||||| |||||||||||| Sbjct 828453 ATTCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCA 828394 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | | |||| |||| ||||| || || ||||||| | ||||| ||||| Sbjct 828393 GAAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGG 828334 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || |||||| ||| ||||| || ||||| || | ||| Sbjct 828333 GGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCA 828274 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||| ||||| | || || | ||| |||||||| Sbjct 828273 ACTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||||| || || ||||| | || | ||||| |||||| ||||| Sbjct 827603 ATGCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCG 827544 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || |||| || || |||||||| || |||| ||| ||||||||| Sbjct 827543 GAAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGT 827484 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| || ||||| || | ||| Sbjct 827483 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCA 827424 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| || || | || || | || |||||||| Sbjct 827423 ACCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 >seq211 Length=255845 Score = 107 bits (118), Expect = 3e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 ||||||||||| || |||||| ||| || ||||||||||| ||| || || |||| Sbjct 251955 GAATACATTTCTGAGTGTACATTTTCAATTGCTATTTGAAAACCATAGAAGCACCGTGCT 251896 Query 39477 TCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 || | |||| | ||||| | ||| ||||| |||| ||||||| ||||||||||| Sbjct 251895 TCCGT-TACTTGGACTTCTTGACTGAACCGTTCTACTAGATTCTCATTGACAATACCATC 251837 Query 39536 AGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT 39595 |||||||| || || || || |||| |||||||| ||| | |||| |||| || Sbjct 251836 TGATGCTGCAAAAAACGCCAATACATGGGATATAAAATGACGTTCGTCATCTGTTAACTT 251777 Query 39596 TTCCCA 39601 | |||| Sbjct 251776 TACCCA 251771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905113643140800