Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1610 143 8e-29 seq211 93.3 1e-13 seq588 91.5 4e-13 seq946 89.7 2e-12 seq243 87.8 5e-12 >seq1610 Length=78138 Score = 143 bits (158), Expect = 8e-29 Identities = 235/336 (70%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| | || || ||||||||||| ||||| ||||| | ||| |||| | ||| | | || Sbjct 40714 TTTTCTTCCTACTGCATCAATTTCATCAATAAAAATAATACAAGGAGCACTTTTTTTAGC 40655 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | | | ||| | |||||| | | || ||||||| |||||| | | |||| ||||||| Sbjct 40654 AGTAGTAAACATTTCTCTAATTCTTGAAGCTCCAACTCCAACAAAAACTTCTTCAAATTC 40595 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 |||| | || | | || ||| | ||| |||||| || || ||||| | || | | Sbjct 40594 AGAACCAGAAATTGAAAAGAAAGGAACACCTGCTTCACCAGCAACTGCTTTTGCTAATAA 40535 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 |||||||| || ||||| ||||| | | |||||||| ||||| ||| |||| |||| Sbjct 40534 AGTCTTACCAGTACCAGGCGGTCCTACAAGAAGAACTCCTTTTGGCACTCTTGCACCCAT 40475 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | |||||| | || ||||||||| | |||| ||| || | ||| ||||| Sbjct 40474 TTG-TGCATATTTTTGTGGAAACTTTAAAAAATGAACAACTTCTTCTAATTCCAATTTTT 40416 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 | || | | || || ||||||| ||| || ||| Sbjct 40415 CTTCTTTAATACCAGCAACATCAGTAAATCTAGTAT 40380 >seq211 Length=255845 Score = 93.3 bits (102), Expect = 1e-13 Identities = 286/433 (66%), Gaps = 12/433 (3%) Strand=Plus/Plus Query 133211 CATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269 |||||||| || ||| | || ||||||||||| || ||||||||||| ||| || Sbjct 251798 CATTTTATATCCCATG-TATTGGCGTTTTTTGCAGCATCAGATGGTATTGTCAATGAGAA 251856 Query 133270 TTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCT 133329 | ||| | |||||| | |||||| ||| | | ||||| || ||| ||||| | Sbjct 251857 TCTAGTAGAACGGTTCAGTCAAGAAGTCCAAGTAACGGAAGCACGGTGCTTCTATGGTTT 251916 Query 133330 ACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACAT 133389 || || || || |||||| | || || | ||||| || || | || | ||| Sbjct 251917 TCAAATAGCAATTGAAAATGTACACTCAGAAATGTATTCCCTCCTTATAAACACATTCAT 251976 Query 133390 CAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTA 133448 || || ||| ||| | | || ||||| |||| | | |||| |||| || || Sbjct 251977 CAGTAATGCCGAAGAGAGGGATTTTCTCTTCAATGCCA-TCGAGAATCTTCCCTGCGTTG 252035 Query 133449 AAAAGAAATCTGACTGGGCTATTAAATGGAT---CCAGGACAAGCGTGCGAGTTTTGCTA 133505 || ||| | | ||||| | || ||||| || |||| || | |||||| Sbjct 252036 CTAAAAAAGCCAATTGGGCCTTAAATTGGATTTCGCATGACA---CAGCAACTTTTGCAG 252092 Query 133506 CTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CT 133564 ||| | |||| || || | ||||| || || || ||||||||| ||| ||| || Sbjct 252093 AACGTGTGATTGCGTTCGCAGCGGTAGAAGGAATCTTCTTCAGTGGT-AGTTTCGCTGCT 252151 Query 133565 ATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATT 133624 || |||||||| || || |||||||| | |||||||| || |||||| | ||| Sbjct 252152 ATCTTTTGGCTGAAGAAACGTGGTATCATGCCTGGACTTACATTCAGCAACGAATTAATT 252211 Query 133625 TCAAGGGACGAGG 133637 || || || |||| Sbjct 252212 TCCAGAGATGAGG 252224 >seq588 Length=681919 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||||||||||| ||||| || || || |||||| | || || | Sbjct 384384 CGATTGTCATACGAGATGGAATAGCATGAGGATTAATAATAATATCGGGTGTAAGACCTT 384325 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCG 251961 || || || ||||| | ||| | || || ||| | ||| ||| ||||||||||| Sbjct 384324 CACAAGAAAATGGCATGT-CTTCTTGTCTGTATTGTATACCACAAGTACCCTTTTGTCCA 384266 Query 251962 TGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTA 252021 || || ||| || || || ||||| || ||||||||| || | ||||| || Sbjct 384265 TGTCGCGAAGCAAATTTGTCGCCAATTTGTGGTATGCGAACACTGCGCACGCGAATTTTG 384206 Query 252022 CAGAAGTTGTAACCATC 252038 || || ||||| || || Sbjct 384205 CAAAACTTGTATCCTTC 384189 >seq946 Length=334814 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | | |||| |||||| |||||||||||||| | | ||||| || || ||| Sbjct 315037 GCACCATAACCTATCAAACAATCCCGTTCCATTTCACCCAATCTGAGACCCCCTTCTTTT 314978 Query 233333 GACCTACCCTGGACTGTT---TGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAA 233389 || || || | ||||| |||||||| || || | || ||||| ||||||| | Sbjct 314977 GATCTTCCTT---CTGTTGGCTGACGAGTCAATACTGCCCTGGGACCACGAGCACGGGCA 314921 Query 233390 TTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 | ||||| || | ||||||||||||| | || |||||| Sbjct 314920 TGCATTTTGTCCTGCACCATATGCTTCAATTTCTGATAATA 314880 >seq243 Length=1913784 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| | || || ||||||||||| || ||||| | | ||| || | | || | Sbjct 1629329 CTTTTTCTTCCTACGGCATCAATTTCATCGATGAACAATATACAAGGCGCGTGTTTACGT 1629270 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || || || | |||| ||| | ||| | ||||| ||| || |||| || | |||| Sbjct 1629269 GCCATCGCGAACATGTCTCGTACTCTGGAAGGTCCAACACCGACGAACATCTCCAAAAAT 1629210 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||||| | |||||| |||||| | || || ||||| || ||| ||| | || || Sbjct 1629209 TCAGATCCTGATACTGTAATGAAAGGCACGTTGGCTTCACCAGCTGTTGCTTTTGCGAGC 1629150 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || ||||| || || ||||| || Sbjct 1629149 AACGTTTTACCCGTACCCGGTGGGCC 1629124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471780337257912