Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1034 91.5 2e-12 seq1077 86.0 8e-11 >seq1034 Length=482246 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 ||||| | || || || || |||||||| || || || || || ||| || || Sbjct 344708 TTTGAACTTATTCTTGCTGCAAACTACCTGGATATTAAAGGACTCCTTGATGTTACCTGT 344767 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 || |||| ||||||||||| ||||||||| |||| || |||||||||||||| |||||| Sbjct 344768 AAAACTGTAGCCAACATGATAAAGGGCAAGACGCCAGAAGAGATCCGCAAGACTTTTAAC 344827 Query 1592291 ATCAA 1592295 || || Sbjct 344828 ATAAA 344832 >seq1077 Length=17003 Score = 86.0 bits (94), Expect = 8e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | | ||| | ||| || || || | || || | || Sbjct 14867 GCTTGGCCAGTTCTCCTGGTAGAAGCAGCCTCACAGCTGTTTGTACTTCACGAGACGTGA 14808 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || ||||| | || |||| ||| ||||||| | ||||||| |||| | Sbjct 14807 TGGTGGAACGTTTGTTGTAATGAGCCAATCGGGACGCCTCGGCGGCGATGCGCTCGAAGA 14748 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||| | || |||||| || |||||| | Sbjct 14747 TGTCGTTGACGAAGCTGTTCATGATGCTCATAGCTTTACTGGAGACTCCAGTGTCGGGAT 14688 Query 1254523 GCACCTGCTTGAGCACCTTGTAGAT 1254547 | || ||||| |||||||||||||| Sbjct 14687 GGACTTGCTTTAGCACCTTGTAGAT 14663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106977040186392