Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq255 154 1e-32 seq188 129 5e-25 seq771 114 1e-20 seq1554 105 6e-18 >seq255 Length=939575 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||||| || ||||| || Sbjct 827374 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCC 827433 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || || |||||||| ||||||||||| || || || || || Sbjct 827434 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAG 827493 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||| ||| |||| | || ||||| || Sbjct 827494 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAAT 827553 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||||| ||| || | ||||||||| Sbjct 827554 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGACTTCGCGGAGGC 827601 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || |||| || ||||| || || |||||||| ||||| | Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| || || || || | | || || || ||| Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || ||||| || | ||| | || ||||| Sbjct 827782 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 827828 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| ||||| | ||||||||||| | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || || |||||||||||||| || ||||| ||||| Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| || || || || | | || || || ||| Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||||| || || ||||| || | ||| | || |||||| Sbjct 828010 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGGC 828057 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || || ||||| ||||| | Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || ||||||||||| || || || |||||| Sbjct 828284 GATACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAA 828343 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| |||||||||||||| || | | || |||||||| Sbjct 828344 CAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAAT 828403 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || |||||||| | || ||| | || || Sbjct 828404 ATTCAGAAAGAATCAACCCTTCACTTGGTACTTCGTTTGAGGGGTGG 828450 >seq188 Length=1630868 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||||||| |||| || ||||| || || || ||||| || || || Sbjct 123876 ATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATCC 123935 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||||| || || || || ||||||||||||||||| || || || || Sbjct 123936 GACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAG 123995 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || || | | | || ||||| ||| Sbjct 123996 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAAC 124055 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 124056 ATTCAGAAGGAATCCACCCTTCATCTGGT 124084 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| |||||| | Sbjct 123648 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123707 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 123708 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123767 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||||| |||||| ||| | || || ||||| Sbjct 123768 CAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAAT 123827 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||||| Sbjct 123828 ATTCAGAAAGAATCTACTCTTCATTTGGT 123856 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| |||||| | Sbjct 124104 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 124163 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 124164 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 124223 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||||| |||||| ||| | || || || || Sbjct 124224 CAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAAT 124283 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||||| Sbjct 124284 ATTCAGAAAGAATCTACTCTTCATTTGGT 124312 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||||||| |||| |||||||| || || || ||||| || || | Sbjct 124332 ATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTCT 124391 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||||| || || || || ||||||||||| ||||| || || || || Sbjct 124392 GACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCAG 124451 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || || || || ||| | | | ||||| || || Sbjct 124452 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAAT 124511 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || ||||| || Sbjct 124512 ATCCAAAAAGAATCAACTCTTCACTTAGT 124540 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| |||||| | Sbjct 122964 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123023 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 123024 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123083 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | | || ||||| ||| Sbjct 123084 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123143 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 123144 ATTCAGAAGGAATCCACCCTTCATCTGGT 123172 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| |||||| | Sbjct 123192 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 123252 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123311 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | | || ||||| ||| Sbjct 123312 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123371 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 123372 ATTCAGAAGGAATCCACCCTTCATCTGGT 123400 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| |||||| | Sbjct 123420 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123479 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 123480 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123539 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | | || ||||| ||| Sbjct 123540 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123599 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 123600 ATTCAGAAGGAATCCACCCTTCATCTGGT 123628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || || || || || || || || | Sbjct 122736 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGGCATCT 122795 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| || || ||||| || |||||||| || || ||||| Sbjct 122796 GATACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 122855 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | | || ||||| ||| Sbjct 122856 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 122915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||| Sbjct 122916 ATTCAGAAGGAATCCACCCTTCATCTGGT 122944 >seq771 Length=410761 Score = 114 bits (126), Expect = 1e-20 Identities = 146/197 (74%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || ||||| || || ||||| || || || || || || Sbjct 280233 ACAATGCAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCT 280174 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||| || | |||| ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 280173 TCCGATACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGAT 280114 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGAT 24877 ||||| ||| | ||||| || || || |||||||| ||| ||| ||| | || || Sbjct 280113 CAACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCG---TACATTATCCGAC 280057 Query 24878 TATAACATTCA-AAAGG 24893 |||||||| || ||||| Sbjct 280056 TATAACATCCAGAAAGG 280040 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || ||||| || || || || || || || || || || || Sbjct 283077 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTTGAGGCTTCC 283018 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || || ||||||||||| || ||||| || ||||| |||||| Sbjct 283017 GATACTATAGAAAATGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCGGATCAA 282958 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | ||||| || || || |||||||| ||| Sbjct 282957 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGAT 282922 >seq1554 Length=169980 Score = 105 bits (116), Expect = 6e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||| | |||||| ||| || || | ||| || || || ||||| || || Sbjct 3963 ACAAACATATTGACAGCAATGGATGCCAAGTTACATACTGCAACTTCCTCAGGACTTGAA 3904 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || | | ||| || | ||| | |||||||| ||| || || ||||||| ||| |||||| Sbjct 3903 TACTGTATAATCTCTGTACAGAGATTACTACTCTTAATTGTTCCTAAATGTTGCTGATTG 3844 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||| || |||||| ||||||||| ||||||||||| ||||| ||||| ||||| Sbjct 3843 GATTTGCGATTACAATGATCTTTGTACAGCATATACGGCGTGCCTGTTTCTACTTG 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886487529280