Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq254 203 3e-47 seq188 86.0 5e-12 >seq254 Length=4355184 Score = 203 bits (224), Expect = 3e-47 Identities = 309/440 (70%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || |||| ||||||||||| ||||| || | | | | ||||||| Sbjct 1385271 GGAGGATTCTTCAAAATGAAGGTGTTCAGCTTGTGATTGCATTCAACTAGACCGTGATGT 1385212 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| ||||| || ||||| |||| | ||| || || || | || |||||| Sbjct 1385211 CCGCAGGCTTTACAACCCTGCGAGATGGTTCCCTTCTTGGCACTGACCAACAGTTCAGTC 1385152 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 || || ||||| || |||| || | || ||||||| ||||| ||||| | || || Sbjct 1385151 TCAGGATTGTCGCAGGCCGGGCAAAGGACGTACTTGCGAATGAATCCATCCAAGAGATCT 1385092 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | ||| | |||||| || || || ||||| |||| || |||||| |||| | | Sbjct 1385091 TGAAGCTTGGTTGCGTCGTGCGAACCATTAACGATAAATCTCTCATTTTTGAAATCAAAC 1385032 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 || || ||||| || ||||| || || || ||||| ||||| || | ||||| | || Sbjct 1385031 TGTGTCTGCGCACCGAGCTCACATCCAAAATACTTAGTCGGATATGTAGCCGGTCTACCG 1384972 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | || || || | ||| |||||| || ||||||||||| || || || || || ||| Sbjct 1384971 ATAGCTTTAGCCACGTCGACCATGTTAACTATGACAGTCTTTATACCATTTCCTTTGCCT 1384912 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 |||||||| || ||| || ||||| || ||||| |||||||| || |||||||| Sbjct 1384911 TCGACCTTAGCCTGGATCCGTGGCATCTTATAGCGATAGAACGCATCGCTGACATTGCGA 1384852 Query 34624 TTAACGTTCACAGTCCCCAT 34643 || || || || ||||||| Sbjct 1384851 TTGACATTGACGCTCCCCAT 1384832 >seq188 Length=1630868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 |||||| ||||| ||||| ||| | || || || ||||| ||| | ||| || |||| Sbjct 124103 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 124162 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | |||||| || ||| || || ||||| | || |||| Sbjct 124163 A-GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATC 124221 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | || | ||| || |||||||| ||||||| | ||||| | | || |||| Sbjct 124222 AGCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACA 124281 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | ||||| ||||||||||| | || |||| | || || || || |||| Sbjct 124282 ATATTCAGAAAGAATCTACTCTTCATTTGGTACTCAGGCTTCGTGGTGGAA 124332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831657742168