Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1077 114 2e-19 seq364 111 2e-18 seq485 105 1e-16 seq1665 96.9 5e-14 seq822 96.9 5e-14 seq1933 87.8 3e-11 >seq1077 Length=17003 Score = 114 bits (126), Expect = 2e-19 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| |||||| |||||||||| || | | Sbjct 14906 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCTGGTA 14847 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | || || | ||| ||| || ||||| Sbjct 14846 GAAGCAGCCTCACAGCTGTTTGTACTTCACGAGACGTGATGGTGGAACGTTTGTTGTAAT 14787 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | ||||||| |||| ||||||||||| || ||||| Sbjct 14786 GAGCCAATCGGGACGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 14727 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || |||||| || || ||||| |||||||||| Sbjct 14726 TGATGCTCATAGCTTTACTGGAGACTCCAGTGTCGGGATGGACTTGCTTTAGCACCTTGT 14667 Query 1485710 A 1485710 | Sbjct 14666 A 14666 >seq364 Length=1243768 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| |||||| |||||||||| || | | Sbjct 23752 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCTGGTA 23693 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||||| | ||| ||| || ||||| Sbjct 23692 GAAGCAGCCTCACAGCTGTTTGTACTTCGCGAGACGTGATGGTGGAACGTTTGTTGTAAT 23633 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | ||||||| |||| ||||||||||| || ||||| Sbjct 23632 GAGCCAATCGGGAAGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 23573 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||||| || || ||||| |||||||||| Sbjct 23572 TGATGCTCATAGCTTTACTGGAAACTCCAGTATCGGGATGGACTTGCTTCAGCACCTTGT 23513 Query 1485710 A 1485710 | Sbjct 23512 A 23512 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| ||||| || ||| |||||| | |||||||| || | | Sbjct 1023092 TGTATTTGGTGACGGCCTTAGTACCTTCACTGACAGCGTGCTTAGCCAGTTCACCAGGTA 1023151 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | || || || || | ||| || | ||| ||| |||||||||| Sbjct 1023152 AAAGCAGCCTAACAGCAGTTTGCACCTCACGCGACGTGATGGTGGAGCGCTTGTTATAAT 1023211 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| ||||||| || | ||||||||||| || ||||| Sbjct 1023212 GAGCCAGTCGAGAAGCCTCGGCAGCGATGCGTTCAAAGATGTCGTTGACGAAGCTGTTCA 1023271 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || || || || || ||||| |||||||||| Sbjct 1023272 TGATGCTCATAGCTTTACTGGAAACTCCAGTATCTGGATGAACTTGCTTCAGCACCTTGT 1023331 Query 1485710 A 1485710 | Sbjct 1023332 A 1023332 >seq485 Length=12425 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| |||||| |||||||||| || | | Sbjct 11297 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCTGGTA 11238 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | || || | ||| ||| || ||||| Sbjct 11237 GAAGCAGCCTCACAGCTGTTTGTACTTCACGAGACGTGATGGTGGAACGTTTGTTGTAAT 11178 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | ||||||| |||| ||||||||||| || ||||| Sbjct 11177 GAGCCAATCGGGACGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 11118 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||||| || || ||||| |||||||||| Sbjct 11117 TGATGCTCATAGCTTTACTGGAAACTCCAGTATCGGGATGGACTTGCTTCAGCACCTTGT 11058 Query 1485710 A 1485710 | Sbjct 11057 A 11057 >seq1665 Length=16256 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || || || || || ||| |||||| |||||||||| || | | Sbjct 5818 TGTACTTGGTGACAGCTTTCGTGCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCTGGTA 5877 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||| || || | ||||| | ||| || || ||||| Sbjct 5878 GAAGCAGCCTCACGGCTGTTTGTACTTCGCGAGACGTGATGGTAGAACGTTTGTTGTAAT 5937 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||| || |||| | ||||||| |||| ||||||||||| || ||||| Sbjct 5938 GGGCTAATCGGGAAGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 5997 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || || || || || ||||| || ||||||| Sbjct 5998 TGATGCTCATAGCTTTACTGGAGACTCCAGTATCCGGATGTACTTGCTTCAGTACCTTGT 6057 Query 1485710 AAA 1485712 ||| Sbjct 6058 AAA 6060 >seq822 Length=18178 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| |||||| |||||||||| || | | Sbjct 14833 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCTGGTA 14892 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||||| | ||| ||| || ||||| Sbjct 14893 GAAGCAGCCTCACAGCTGTTTGTACTTCGCGAGACGTGATGGTGGAACGTTTGTTGTAAT 14952 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || |||| | ||||||| |||| ||||||||||| || ||||| Sbjct 14953 GAGCCAATCGGGAAGCTTCGGCGGCGATGCGCTCGAAAATGTCGTTGACGAAGCTGTTCA 15012 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| | |||| || ||||| || || || || | |||||| | Sbjct 15013 TGATGCTCATAGCTTTGCTAGAGACTCCAGTATCGGGATGGACTTGTTTCAACACCTTAT 15072 Query 1485710 A 1485710 | Sbjct 15073 A 15073 >seq1933 Length=2710 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || || || || || ||| |||||| |||||||||| || | | Sbjct 594 TGTACTTGGTGACAGCTTTCGTGCCTTCACTGACAGCGTGCTTGGCCAGTTCTCCCGGTA 535 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||||| | ||| || || ||||| Sbjct 534 GAAGCAGCCTCACAGCTGTTTGTACTTCGCGAGACGTGATGGTAGAACGTTTGTTGTAAT 475 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || |||| | ||||||| |||| ||||||||||| || ||||| Sbjct 474 GAGCCAATCGGGAAGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 415 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| | |||| || ||||| || || || || | |||||| | Sbjct 414 TGATGCTCATAGCTTTGCTAGAGACTCCAGTATCGGGATGGACTTGTTTCAACACCTTAT 355 Query 1485710 A 1485710 | Sbjct 354 A 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916036203867464