Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq188 118 7e-22 seq771 104 2e-17 seq255 93.3 3e-14 >seq188 Length=1630868 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||||||||| || || || || | || |||| Sbjct 122947 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 122888 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| | ||||| ||| | || | || ||||| || Sbjct 122887 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 122828 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | |||| ||| ||||| || |||| ||| |||||| Sbjct 122827 TGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTC 122768 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || | ||||| || || ||||||||||| Sbjct 122767 TTCCCAGTCAAAGTCTTCACGAAAATCTGCATGAT 122733 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||||||||| || || || || | || |||| Sbjct 123175 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123116 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| | ||||| ||| | || | || ||||| || Sbjct 123115 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123056 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | |||| || ||| || || |||| ||| |||||| Sbjct 123055 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 122996 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || |||||||| Sbjct 122995 TTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||||||||| || || || || | || |||| Sbjct 123403 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123344 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| | ||||| ||| | || | || ||||| || Sbjct 123343 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123284 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | |||| || ||| || || |||| ||| |||||| Sbjct 123283 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 123224 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || |||||||| Sbjct 123223 TTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||||||||| || || || || | || |||| Sbjct 123631 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123572 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| | ||||| ||| | || | || ||||| || Sbjct 123571 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123512 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | |||| || ||| || || |||| ||| |||||| Sbjct 123511 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 123452 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || |||||||| Sbjct 123451 TTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||||||||| || || || || |||| | || Sbjct 124087 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCT 124028 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| | ||||||||| | || | || || ||||| Sbjct 124027 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCT 123968 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || | |||||| || ||||| || |||| ||| || || Sbjct 123967 TGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTT 123908 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | || || |||||||||||||| Sbjct 123907 TTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | | ||| || |||| |||| || || |||||||| |||||||| | Sbjct 123876 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAG 123817 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || |||| || || || ||||| || ||||||| | ||||| ||| | | Sbjct 123816 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123757 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | ||||| ||| || | | |||| || ||| || | Sbjct 123756 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 123697 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||||||||| || || ||||| || || |||||||| Sbjct 123696 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | | ||| || |||| |||| || || |||||||| || ||||| | Sbjct 124332 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAG 124273 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || |||| || || || ||||| || ||||||| | ||||| ||| | | Sbjct 124272 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 124213 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | ||||| ||| || | | |||| || ||| || | Sbjct 124212 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 124153 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||||||||| || || ||||| || || |||||||| Sbjct 124152 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| ||||| | | || || | ||||| || || || || || || ||||| Sbjct 124561 TTTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCT 124502 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || | || |||| || ||||||||||| || || |||| | ||||||||| | Sbjct 124501 GAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 124442 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||| ||||| | ||||| || || | |||||| ||| ||||| Sbjct 124441 GGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCA 124382 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| || || || || || | || || |||||||||||||| Sbjct 124381 ACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 >seq771 Length=410761 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| || |||||||| |||| | || |||| ||||| ||||| || ||||||| Sbjct 282888 CCTTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 282947 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | || || || || || | || | || ||||| || | || || || || | Sbjct 282948 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 |||| | || ||||| || |||| ||| |||||||| ||||| |||||||| |||| Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 283068 AGATCTGCAT 283077 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||||||||| |||| | || |||| ||||| ||||| || |||||||| Sbjct 280043 TTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 280102 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || || || || | || | || |||||||| | || || || || | | Sbjct 280103 AGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTTCA 280162 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || ||||| || |||| ||| || ||||| ||||| |||||||| || ||| Sbjct 280163 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGAAG 280222 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 280223 ATCTGCAT 280230 >seq255 Length=939575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| |||||||| | || |||| ||||| ||| || |||||||| ||||| || | Sbjct 828452 TTCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAG 828393 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || ||||| || || |||||||| || || ||||| || || | | Sbjct 828392 AAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGG 828333 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | ||||| |||||| | | |||| || || || | Sbjct 828332 GGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAA 828273 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || || || || ||||| ||||| || ||||||||||| Sbjct 828272 CTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || || || || || | | |||| ||||| ||||| || || ||| Sbjct 827564 TCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAG 827505 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| |||||||| | || | || || ||||| | || || ||||| | Sbjct 827504 ATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 827445 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | ||| || || ||||| || |||||||| ||| Sbjct 827444 TCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACA 827385 Query 34967 AAGATCTGCATGAT 34980 |||||||||||||| Sbjct 827384 AAGATCTGCATGAT 827371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684956503144