Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq255 123 4e-23 seq188 114 2e-20 >seq255 Length=939575 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || |||||||||||||| || ||| | || || ||| | | Sbjct 827603 TGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCAG 827662 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||| || ||| ||||||||||||||| || ||||| | Sbjct 827663 ATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAGC 827722 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||| | || || || || | | || || || | Sbjct 827723 AACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACA 827782 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| | || ||||| | ||| | | ||||||| Sbjct 827783 TCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGGTA 827830 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || ||||| || ||| | || || ||| | | Sbjct 828225 TGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCGG 828284 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| || ||||||||||| || || ||||||| Sbjct 828285 ATACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAAC 828344 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || || ||||| | || || || ||| | | |||||||||| Sbjct 828345 AACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAATA 828404 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || | || || ||| | || || || || || Sbjct 828405 TTCAGAAAGAATCAACCCTTCACTTGGTACTTCGTTTGAGGGGTGG 828450 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| ||||| | || |||||| | | Sbjct 827831 TGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCAG 827890 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||||| ||| |||||||||||||| || ||||| | Sbjct 827891 ATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAGC 827950 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||| | || || || || | | || || || | Sbjct 827951 AACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACA 828010 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| ||| | || ||||| | ||| | | ||||| Sbjct 828011 TCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 828056 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | |||||||||||||| || | || || ||| | || Sbjct 827375 TGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCCG 827434 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || || || || ||||||||||||||||| || || | Sbjct 827435 ATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAGC 827494 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || || | || ||| |||||| | | ||||| |||| Sbjct 827495 AGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAATA 827554 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || |||||||| || | ||||| || || Sbjct 827555 TTCAGAAAGAATCAACGCTTCATTTGGTTTT 827585 >seq188 Length=1630868 Score = 114 bits (126), Expect = 2e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | || || | |||||||| || || || |||| || ||| | | | Sbjct 123649 TGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA- 123707 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 123708 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123767 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || ||||| | || ||| |||| ||| | || |||||| Sbjct 123768 CAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAAT 123827 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || |||||||| ||| | ||||| ||| Sbjct 123828 ATTCAGAAAGAATCTACTCTTCATTTGGTA 123857 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | || || | |||||||| || || || |||| || ||| | | | Sbjct 124105 TGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA- 124163 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 124164 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 124223 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || ||||| | || ||| |||| ||| | || || ||| Sbjct 124224 CAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAAT 124283 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || |||||||| ||| | ||||| ||| Sbjct 124284 ATTCAGAAAGAATCTACTCTTCATTTGGTA 124313 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| ||||| || ||||| || || |||| || || | Sbjct 124333 TGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTCTG 124392 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || |||||| ||| ||||| || || ||||| || || | Sbjct 124393 ACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCAGC 124452 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || || ||| | || ||| | || | |||| || |||| Sbjct 124453 AGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAATA 124512 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAAT 146262 | ||||||||||| ||| | || ||||| | ||| | || || || |||| Sbjct 124513 TCCAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTTAGGGGTGGAAAAT 124563 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | || || | |||||||| || || || |||| || ||| | | | Sbjct 122965 TGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA- 123023 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 123024 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123083 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || || ||| | || ||| | || | | ||||| || Sbjct 123084 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123143 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || || ||||| || | ||| | ||| Sbjct 123144 ATTCAGAAGGAATCCACCCTTCATCTGGTA 123173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | || || | |||||||| || || || |||| || ||| | | | Sbjct 123193 TGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA- 123251 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 123252 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123311 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || || ||| | || ||| | || | | ||||| || Sbjct 123312 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123371 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || || ||||| || | ||| | ||| Sbjct 123372 ATTCAGAAGGAATCCACCCTTCATCTGGTA 123401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | || || | |||||||| || || || |||| || ||| | | | Sbjct 123421 TGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA- 123479 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 123480 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123539 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || || ||| | || ||| | || | | ||||| || Sbjct 123540 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 123599 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || || ||||| || | ||| | ||| Sbjct 123600 ATTCAGAAGGAATCCACCCTTCATCTGGTA 123629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786146981689920