Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq188 170 1e-37 seq255 145 6e-30 >seq188 Length=1630868 Score = 170 bits (188), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||| |||||||| || |||||||| ||||| | || ||||| Sbjct 124091 ACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCC 124032 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || |||||| | ||||| || ||||| || || || || || ||||| Sbjct 124031 GTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTT 123972 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | || ||| |||||| ||||| || || |||||||| || | Sbjct 123971 GTCTTG-AATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGA 123913 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||||||||| ||||||||||| ||||||||| Sbjct 123912 TCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 163 bits (180), Expect = 2e-35 Identities = 181/239 (76%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 ||| | || ||| ||||| | || || || || ||||| || ||||||||||| || || Sbjct 124568 TTAACATTTTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATT 124509 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669 || || | | || || ||| || ||||| || |||||| | ||||| || ||||| Sbjct 124508 GTAGTCTGAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTG 124449 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAG 29728 || || || || |||||||||||||| |||||| | || ||| |||||| ||||||| Sbjct 124448 GTCTGGTGGGATTCCCTCTTTGTCTTG-AATTTTAGCCTTCACATTTTCTATCGTGTCAG 124390 Query 29729 AAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || |||||||| || || ||||| |||||||| ||||||||||| ||||||||| Sbjct 124389 ACGCCTCAACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 138 bits (152), Expect = 9e-28 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||| |||||||| || |||||||| ||||| | || || || Sbjct 123179 ACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCC 123120 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | ||||| || |||||||| || || || || || || Sbjct 123119 ATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTT 123060 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| ||| |||| | ||||| || ||| |||||||| || | Sbjct 123059 ATCTTG-AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGA 123001 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | || || || |||||||||||| Sbjct 123000 TGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 138 bits (152), Expect = 9e-28 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||| |||||||| || |||||||| ||||| | || || || Sbjct 123407 ACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCC 123348 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | ||||| || |||||||| || || || || || || Sbjct 123347 ATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTT 123288 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| ||| |||| | ||||| || ||| |||||||| || | Sbjct 123287 ATCTTG-AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGA 123229 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | || || || |||||||||||| Sbjct 123228 TGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 138 bits (152), Expect = 9e-28 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||| |||||||| || |||||||| ||||| | || || || Sbjct 123635 ACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCC 123576 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | ||||| || |||||||| || || || || || || Sbjct 123575 ATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTT 123516 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| ||| |||| | ||||| || ||| |||||||| || | Sbjct 123515 ATCTTG-AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGA 123457 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | || || || |||||||||||| Sbjct 123456 TGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || |||||||| ||||| ||||| || | | || || ||| Sbjct 123859 AGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCC 123800 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| |||||| | ||||| || |||||||| || || || || || || ||| Sbjct 123799 TCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123740 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| |||| | ||||| || ||| |||||||| || || || Sbjct 123739 TG-AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGT 123681 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || | || || || |||||||||||| Sbjct 123680 CTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123647 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || |||||||| ||||| || || || | | || || ||| Sbjct 124315 AGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCATCC 124256 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| |||||| | ||||| || |||||||| || || || || || || ||| Sbjct 124255 TCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 124196 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| |||| | ||||| || ||| |||||||| || || || Sbjct 124195 TG-AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGT 124137 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || | || || || |||||||||||| Sbjct 124136 CTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 124103 >seq255 Length=939575 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || || ||||| || ||||| ||||| ||||| || || | | || | Sbjct 827816 CGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCG 827757 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| |||||| | ||||| | ||||||||| || ||||| || ||||| Sbjct 827756 TCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTA 827697 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||| ||| |||| | ||| || ||| ||| ||||| ||||| || Sbjct 827696 TCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATG 827637 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| |||||||| |||||||| Sbjct 827636 GTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||||||| || ||||| ||||| || |||||||| ||||| |||||||| | Sbjct 828451 TCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGA 828392 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | || || || |||||||| || | || | | ||| ||||| || || Sbjct 828391 AAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGG 828332 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || |||||||| || |||||| | ||||||| |||| | || || ||| ||| | Sbjct 828331 GATGCCTTCTTTGTCCTG-AATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAA 828273 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| ||||| |||||||| ||||| | || || || || |||||||| Sbjct 828272 CTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || || ||||| || ||||| ||||| ||||| || || | | || | Sbjct 828044 CGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCG 827985 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| |||||| | ||||| | ||||||||| || ||||| || |||||| Sbjct 827984 TCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTG 827925 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | |||||| |||| | || || ||| ||||||||| | || || Sbjct 827924 TCTTG-AATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAAT 827866 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | ||||| || || |||||||| Sbjct 827865 GGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||||||||| |||||||| ||||| || ||||| | || || | ||| || Sbjct 827582 ACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATCTTCC 827523 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || ||||||||| | ||||||| ||||| || || ||||| || |||||||| || Sbjct 827522 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGG 827463 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || |||||| |||| | || || ||| ||| || || || || || ||||| Sbjct 827462 ATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGTTTTT 827403 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| || ||||| |||||||| Sbjct 827402 CCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385209922958616