Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq502 104 3e-17 seq588 86.0 8e-12 >seq502 Length=146425 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 ||| | |||||| |||| | ||| || ||| || | ||| || | || ||||||| Sbjct 100118 GAATTATTATGGTTTATCAGAGGATCGACTAATGCTAAAGAACTGTCAAGTAAAGGTGTT 100059 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 | ||||| ||| ||| |||| ||||||||| || ||| || || | | ||| || Sbjct 100058 CATATTTGGGATGCAAATAGTTCACGTGAATTTCTAAATTCCTGTGGCTATGATGACAGG 99999 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 171792 | ||||||||| | ||||| ||||||||||||||||| || || || || || ||| Sbjct 99998 GAGGAAGGTGATCTCGGTCCTGTTTATGGATTTCAATGGCGAAATTTTGGTGCACAGTAT 99939 Query 171793 ATCGACTGTTATACAGATTACACAGGACAAGG 171824 ||||| | || ||||| |||| ||||| Sbjct 99938 ATCGATATGAACACTGATTATTCAGGGCAAGG 99907 >seq588 Length=681919 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 || ||||| |||| || || |||||| |||| || |||| | |||| || |||||||| Sbjct 384228 CGCATACCACAAATTGGCGACAAATTTGCTTCGCGACATGGAC-AAAAGGGTACTTGTGG 384286 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 ||| || ||||||||| ||||||||| | | |||| | ||| |||||||| Sbjct 384287 TATACAATACAGACAAGAAGACATGCCATTTTCTTGTGAAGGTCTTACACCCGATATTAT 384346 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 ||||||||| || |||||| || | ||||| || Sbjct 384347 TATTAATCCTCATGCTATTCCATCTCGTATGACAAT 384382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628515675279360