Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1605 318 2e-81 seq1610 156 1e-32 seq1322 141 3e-28 >seq1605 Length=91930 Score = 318 bits (352), Expect = 2e-81 Identities = 549/790 (69%), Gaps = 37/790 (5%) Strand=Plus/Plus Query 69268 TATTTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATG 69327 || || ||||||||||| | ||| | ||| | | || | ||||||||| |||| Sbjct 27752 TACTTTTATGTAATGCACCGTTTTAATATCGA---TCAAATTAAATTTATTAAAAGTATG 27808 Query 69328 CAAACTCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387 || | || ||||||||||| ||||| ||||||| ||| |||| || | | || Sbjct 27809 CATGAACAAAAGTTATATGCTTCAATTAGCATTGGTGTTAAAAAAGAGGATAAAGAGTTA 27868 Query 69388 ATTAATCAATTAGCTGATGAAA----AACTTGTTCCAGAATATATCACTATTGATATAGC 69443 || | |||||| || ||| | || ||||||||| ||| ||||||||||| || Sbjct 27869 CTTGAACAATTA----ATCAAACTGAATCTAATTCCAGAATTTATTACTATTGATATTGC 27924 Query 69444 TCACGGACATTCTAATGCTGTTATTAAAATGATTCAACATATAAAGAAGATGTT------ 69497 || || ||| ||||||| | |||||||| || |||||| | | || Sbjct 27925 ACATGGTCATAGTAATGCTATGGAAGAAATGATTAAATTTATAAAAACTACTTTTGCTAA 27984 Query 69498 ACCAAATAGT------TTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGA 69551 | |||||| | ||| ||||||||||||| ||| ||| |||||| || Sbjct 27985 AACAAATACTAAACCTTTTATTATTGCTGGTAACGTTATGACAAAAACCGCTGTTAAAGA 28044 Query 69552 ACTTGAAAATGCAGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTAT 69611 | ||||| |||||| ||||| | ||| ||||| |||||||||| |||| ||||| Sbjct 28045 TTTAGAAAAATGAGGCGCTGATGCAATTAAATTTGGTGTTGGCCCAGGAAAAGCTTGTAT 28104 Query 69612 TACTAAAATCAAAACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTG 69671 ||||||| | |||||||| |||||||| || || || || ||| ||| || | | || Sbjct 28105 TACTAAACTAAAAACTGGATTTGGTACAGGTGGTTGACAATTAAATGCTTTACAA-GATG 28163 Query 69672 TT--CAAAAGTAGCTACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGAT 69729 || ||| || | | ||||||||| ||||||| |||||||||||| | ||| |||||| Sbjct 28164 TTGCCAATAGCACC-ACTAAACCATTAATTGCAGATGGTGGTATTAGATGTAATGGTGAT 28222 Query 69730 ATTGCTAAATCTGTACGTTTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGT 69789 ||||||||| | || |||||| || | ||| ||||| || | || |||||| Sbjct 28223 ATTGCTAAAGCAATAGCTTTTGGTGCCACTATGATTATGGCAGGAAGTATTTTAGCGGGT 28282 Query 69790 CACGAGGAATCACCAGGTGAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTT 69849 | || |||||||| || | | | || ||||||| ||| || ||||| |||||| Sbjct 28283 TATGATGAATCACCTGGCAAAATTGTTACAATAAATGGTCAATCTTACAAAGAATATTTT 28342 Query 69850 GGATCCGCTTCTGAATATCAAAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACAT 69909 ||||| || | | | | || | ||| ||| || ||||||| || || |||| | Sbjct 28343 GGATCAGCAAGTATTTTTAACAAAGCGGAAGCGAAAAATATTGAAGGTAAAAAAATACTT 28402 Query 69910 GTAGAATGTAAAGGGAGTTTGAA----AGATACGTTGATTGAAATGGAACAAGATCTTCA 69965 || || |||||| || || ||||| | | ||||||||| ||||| | || Sbjct 28403 GTTCCATATAAAGG----TTCAATTGCTGATACTTATAAAGAAATGGAAGAAGATTTACA 28458 Query 69966 ATCTTCAATTTCTTATGCTGGTGGTAAAGATTTATTAGCAATTA-GAAATGTAGATTATG 70024 |||| | |||||||||||||||||||||||||||| ||| | | |||||| ||||||| Sbjct 28459 ATCTGCTATTTCTTATGCTGGTGGTAAAGATTTATCTGCATTAACAAAATGT-GATTATG 28517 Query 70025 TCGTTGTTAA 70034 | ||||||| Sbjct 28518 TTATTGTTAA 28527 >seq1610 Length=78138 Score = 156 bits (172), Expect = 1e-32 Identities = 206/283 (73%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 182240 GAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCTT 182299 |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||||||| ||| Sbjct 29668 GAGCTTTACCAGATGCAAGAGATGGATTGAAACCAGTACATCGTCGAATTTTATATTCTT 29727 Query 182300 TATGGGATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCA-ACAGTGAATGGC 182358 || |||||| ||| | | ||||||| ||| |||| ||||| | || | Sbjct 29728 TAGCAATTTTAGGTATGACATATGATAAACCTTATAAAAAAGCAGCACGTATTGTTGGAG 29787 Query 182359 CACGTAATGGGTAATTTCCATCCACATGGTGATA------CTTATGGTGTAATGGTAAAT 182412 | ||| ||| ||||| ||||| |||||||||| ||||| |||||||| Sbjct 29788 AATGTATTGGAAAATTT-CATCCTCATGGTGATATTGCAGTTTATGAAACAATGGTAAGA 29846 Query 182413 ATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAAC 182472 ||| || | ||||| | | ||| ||||| ||| |||||| || ||||| |||||| Sbjct 29847 ATGGCACAAGAATTTAATTATCGTTATCCTTTAGCTGATGGCCAAGGTAATTTTGGT--- 29903 Query 182473 CCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAG 182515 || | ||||||||| |||| || || ||| | |||||||||| Sbjct 29904 TCAATTGATGGTGATAGTGCTGCTGCTATGAGATATACTGAAG 29946 Score = 147 bits (162), Expect = 7e-30 Identities = 281/410 (69%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 180782 TTTACCAGGGAAATTAGCTGATTGTACTTCTAAA------ACTTATTCTGAACTATATAT 180835 ||||||||| |||||||| |||||| |||||||| ||| | | ||| | | | | Sbjct 28825 TTTACCAGGTAAATTAGCAGATTGTTCTTCTAAAGATCCAACTAAAACAGAAGTTTTTCT 28884 Query 180836 TGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAAGTCCGGAAGAAATCGTTACTACCAAGC 180895 ||| |||||||| || |||||||| |||| |||| ||||||| | | | ||||| Sbjct 28885 TGTCGAAGGTGAGTCAGCTGGTGGAACTGCAAAGTTGGGAAGAAGTAGAGAAATTCAAGC 28944 Query 180896 AATATTATCATTACGTGGCAAAATCTTAAACGTGGAGAAA--AGTAGTTTAGAAAGAATG 180953 ||| ||| ||||| | || ||||| | || || || ||| | | ||| |||| | Sbjct 28945 AATTTTACCATTAAGAGGGAAAATAATTAATGTTGAAAAAGCACGACTTTTAAAAGTTTT 29004 Query 180954 CT-TAACTCTGAAATGATTAAGAATATCATAGGTGCAGTTGGTACTGGCATTGATTCGCC 181012 | | || ||||| | ||| ||| || | | ||||| ||| ||| | Sbjct 29005 TTCTGACGAAGAAATAAATAATCTTATTAT---TTCCTTTGGTTGTGGTGTTGGT----- 29056 Query 181013 AGGACAAAAGTTCGAATATGAA-AAATTGCGATATGATAAAATTATTTTCATGTGTGATG 181071 | | || || ||||| | ||||| || ||| ||||||||||| | ||| ||||| Sbjct 29057 ---AAAGAATTT--AATATTACTAAATTACGTTATCATAAAATTATTATTATGACTGATG 29111 Query 181072 CTGATGTCGATGGTTCTCATATTGAAGCACTACTACTAACGTTATTCTATAATTATATGA 181131 ||||||| || ||||| |||||| || || || || |||| || || ||| ||| ||| Sbjct 29112 CTGATGTTGACGGTTCACATATTAAAACATTATTATTAACATTTTTTTATCGTTACATGC 29171 Query 181132 GACCATTAATTGAAAAAGGGCATGTATATGCGGCTCAGCCACCATTATAT 181181 | || |||||||| || || ||||| |||||||| || |||||| Sbjct 29172 GTCCCTTAATTGATGCTGGTTATATATATATAGCTCAGCCTCCTTTATAT 29221 >seq1322 Length=110664 Score = 141 bits (156), Expect = 3e-28 Identities = 415/628 (66%), Gaps = 30/628 (5%) Strand=Plus/Minus Query 53990 TATGGCGATTTCAAAGTTTTATAAAGATTATGCTTTAAAAACA---AACGATAAAAAATT 54046 ||||| |||| ||| |||||||| |||||||||||||| || | |||| ||| Sbjct 81747 TATGGGTATTTTAAAATTTTATAATTCTTATGCTTTAAAAAGTTTTAATGGTAAACAAT- 81689 Query 54047 CTACTTAGAATCTTATGAAGATCGTATTGCTATTGTTTCTTTATTCTTAGGACAAGGTAA 54106 | |||||| |||||||||| | ||| ||| | |||||| || | | ||||| Sbjct 81688 --ATTTAGAAAATTATGAAGATAGAGTTGTTATGAATAGTTTATTTTTCGCTGATGGTAA 81631 Query 54107 T-TTCAATAA---AGCAAAAAGTTTAGCTGTTTCTATGATTGAACAAAGATACCAACCAG 54162 | || || | || |||| || || | |||| || |||| ||||||| Sbjct 81630 TATTGAACATGCTAGTAAAATTTTAAGACAAAT-TATGTCTGGT---AGATTTCAACCAG 81575 Query 54163 CTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCTTGTT-TC 54221 ||||||| || || ||||||| || | || | | || ||| ||| |||| || Sbjct 81574 CTACTCCCACATTTTTAAATGCAGGAAAAAAACAAAGAGGTGAATACACTTCATGTTATC 81515 Query 54222 TTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGCAATGCAA 54281 || ||| ||| || |||| | || | ||||||| | | ||| | |||| || | || Sbjct 81514 TT-TTACGAATTGAAGATAACATGGAATCAATTGCTCGCGCTATTACTACTTCATTACAG 81456 Query 54282 TTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGAAAAGAG 54341 ||||| ||| ||| || || ||||| || | | || | |||| | || Sbjct 81455 TTATCAAAACGTGGTGGTGGAGTTGCTTTGTGTTTAACAAATTTAAGAGAATTTGGAGCT 81396 Query 54342 CAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTTTTAGAA 54401 | ||||||| |||| | || || | || || | |||||||||||| || | ||| Sbjct 81395 CCAATTAAAAATATTAAAAATCAAGCAACAGGCGTTATCCCAGTTATGAAAATTCTTGAA 81336 Query 54402 GATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTA 54461 ||| || || ||||||||||| || || |||||| |||| ||||| || ||||| ||| Sbjct 81335 GATTCATTTTCATATGCTAATCAACTAGGTCAAAGACAAGGTGCTGGGGCAGTTTATTTA 81276 Query 54462 AA----CATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGA 54517 || |||| |||| |||||||| ||| |||||| | || ||||| || Sbjct 81275 AATGTTCATCATCCA----GATATTATGTTATTTTTAGATTCAAAGCGTGAAAATGCAGA 81220 Query 54518 TGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTA---ATTGCTGAAAAAATCTTCTT 54574 ||||||| | ||| |||| | ||| | ||| || ||| |||| | | || || Sbjct 81219 TGAAAAAATTCGTATTAAATCAATGTCTTTAGGAGTAGTTATTCCTGATATTA-CT--TT 81163 Query 54575 CCAATTAGCAAAAAGAAACGAAGAAATG 54602 |||||||||||| || ||| | ||| Sbjct 81162 TGAATTAGCAAAAAACAATGAACAGATG 81135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591870096808448