Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq295 93.3 8e-14 seq188 91.5 3e-13 seq236 87.8 3e-12 >seq295 Length=3859974 Score = 93.3 bits (102), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 82004 CATTA--GTCCTTCTATTATCTAAAGAATTAGCTATCACA-ACATGGTGTTTATATTTAT 82060 ||||| ||| | ||||||| ||| | | | ||||||| |||| |||||||||||| | Sbjct 3477723 CATTAATGTCATGCTATTAT--AAATATTGAATTATCACATACATTGTGTTTATATTTCT 3477780 Query 82061 GTAGAGCTTGTCTAGCTTTAGGTATTAATATAGTTTTATCCGTTTCTAATTTGAATGATA 82120 ||||| | || |||||||||||||| | ||| ||| ||||||||||| || |||| Sbjct 3477781 TCAGAGCATCCCTTGCTTTAGGTATTAACAGTTTTTCATCAGTTTCTAATTTAAAAGATA 3477840 Query 82121 CTACAAAAGCATTTGGACACCATTCATCTACTAA 82154 | ||||| || | ||| |||| | |||||| Sbjct 3477841 CAACAAATGCTTCAGGAATCCATAAGTTTACTAA 3477874 >seq188 Length=1630868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTTCTAACAA 81699 |||||||||| || || |||||||| ||||| ||| || | ||| | ||| Sbjct 122928 ATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 122869 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | || || ||| |||| | ||| |||||||||||||||| || ||||||| || Sbjct 122868 AGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACAT 122809 Query 81760 TTTCAATCGTAT 81771 |||||||||||| Sbjct 122808 TTTCAATCGTAT 122797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTC-----------TT 81692 |||||| |||| ||||| |||||||| ||||||| |||| | || || Sbjct 123847 AGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCCTCAAGCTGTTTT 123788 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| | || || ||| |||| | ||| |||||||||||||||| || ||| Sbjct 123787 CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCT 123728 Query 81753 TTTATATTTTCAATCGT 81769 |||| |||||||||||| Sbjct 123727 TTTACATTTTCAATCGT 123711 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTTCTAACAA 81699 |||||||||| || || |||||||| ||||| ||| || | ||| | ||| Sbjct 123156 ATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 123097 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | || || ||| |||| | ||| |||||||||||||||| || ||||||| || Sbjct 123096 AGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACAT 123037 Query 81760 TTTCAATCGT 81769 |||||||||| Sbjct 123036 TTTCAATCGT 123027 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTTCTAACAA 81699 |||||||||| || || |||||||| ||||| ||| || | ||| | ||| Sbjct 123384 ATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 123325 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | || || ||| |||| | ||| |||||||||||||||| || ||||||| || Sbjct 123324 AGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACAT 123265 Query 81760 TTTCAATCGT 81769 |||||||||| Sbjct 123264 TTTCAATCGT 123255 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTTCTAACAA 81699 |||||||||| || || |||||||| ||||| ||| || | ||| | ||| Sbjct 123612 ATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 123553 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | || || ||| |||| | ||| |||||||||||||||| || ||||||| || Sbjct 123552 AGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACAT 123493 Query 81760 TTTCAATCGT 81769 |||||||||| Sbjct 123492 TTTCAATCGT 123483 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTC-----------TT 81692 |||||| |||| ||||| ||||| || ||||||| |||| | || || Sbjct 124303 AGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCATCCTCAAGCTGTTTT 124244 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| | || || ||| |||| | ||| |||||||||||||||| || ||| Sbjct 124243 CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCT 124184 Query 81753 TTTATATTTTCAATCGT 81769 |||| |||||||||||| Sbjct 124183 TTTACATTTTCAATCGT 124167 >seq236 Length=119964 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 182737 AGTAATTTATCTCCGTGGTTACATTTTGGACATG-TATCTCCACAACGTGTTGCTTTAGA 182795 || ||||| ||||| ||||| |||||||| ||| |||| || || | |||||| Sbjct 39533 AGCAATTTGTCTCCATGGTTTCATTTTGGT-ATGATATCCGTTCAGCGATGTATTTTAGA 39591 Query 182796 AGTATTAAAATGTATACGAGAAAACaaaaaaaaCGTTGAAACGTTTATAGATGAAATAAT 182855 ||||||||||| | || | | ||| | || ||||| ||||| || ||| ||| Sbjct 39592 AGTATTAAAATACAAACAAATGTATAAAGAGTCTGTGGAAACATTTATGGAAGAAGCAAT 39651 Query 182856 TGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGAT 182907 ||| ||||||||| || ||||||||||||| | | ||| || | |||||| Sbjct 39652 TGTGAGAAGAGAATTAAGCGATAATTTTTGTTTCAACAATGAAAAGTACGAT 39703 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257 ||| ||||||||||| ||||| ||| |||||||| || ||||| || ||| | |||| Sbjct 40847 AGGATGTATGTGGTCAATTTGTGGAATACACGATCAAGGTTGGAAGGAGAGAAATGTATT 40906 Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 |||||| ||| |||| |||||||| | ||| || ||||||||||| Sbjct 40907 TGGAAAAATACGATACATGAATTACAAAGGTTGCGAGCGAAAATTTGATGT 40957 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257 ||| ||||||||||| ||||| ||| |||||||| || ||||| || ||| | |||| Sbjct 41844 AGGATGTATGTGGTCAATTTGTGGAATACACGATCAAGGTTGGAAGGAGAGAAATGTATT 41785 Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 |||||| ||| |||| |||||||| | ||| || ||||||||||| Sbjct 41784 TGGAAAAATACGATACATGAATTACAAAGGTTGCGAGCGAAAATTTGATGT 41734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903388885743360