Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq248 102 1e-16 seq254 95.1 2e-14 seq842 86.0 8e-12 seq726 86.0 8e-12 seq135 86.0 8e-12 >seq248 Length=3919243 Score = 102 bits (112), Expect = 1e-16 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||||| | |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||| Sbjct 3704253 TAACCAATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 3704312 Query 11781 TTCGATTCCCCGACGAGGAGGGA 11803 |||||||||||| || ||||||| Sbjct 3704313 TTCGATTCCCCGCCGGGGAGGGA 3704335 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 3704259 ATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 3704318 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 3704319 TCCCCGCCGGGGAG 3704332 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3704332 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3704273 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 3704272 TACTACCGAGGAATT 3704258 >seq254 Length=4355184 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 2844453 TAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 2844512 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 2844513 TTCCCCGCCGGGGAG 2844527 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 2845880 TAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 2845939 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 2845940 TTCCCCGCCGGGGAG 2845954 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 2844456 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2844515 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 2844516 CCCGCCGGGGAGG 2844528 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 2845883 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2845942 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 2845943 CCCGCCGGGGAGG 2845955 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2844527 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2844468 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 2844467 TACTACCGAGGATT 2844454 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2845954 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2845895 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 2845894 TACTACCGAGGATT 2845881 >seq842 Length=91063 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 82543 AGTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 82602 Query 11787 TCCCCGACG 11795 |||||| || Sbjct 82603 TCCCCGCCG 82611 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 82545 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 82604 Query 8718 CCCGACG 8724 |||| || Sbjct 82605 CCCGCCG 82611 >seq726 Length=257960 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 231684 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 231625 Query 8718 CCCGACG 8724 |||| || Sbjct 231624 CCCGCCG 231618 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 231684 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 231625 Query 11789 CCCGACG 11795 |||| || Sbjct 231624 CCCGCCG 231618 >seq135 Length=928714 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 645230 AGTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 645289 Query 11787 TCCCCGACG 11795 |||||| || Sbjct 645290 TCCCCGCCG 645298 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 645232 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 645291 Query 8718 CCCGACG 8724 |||| || Sbjct 645292 CCCGCCG 645298 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139358 CGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTA 139417 || |||||| |||||||||||||||||| | |||| |||||||| | |||||||||||| Sbjct 645298 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 645239 Query 139418 ACGAGGATTTTGGTA 139432 ||| || |||| || Sbjct 645238 CCGAAGACTTTGATA 645224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652828674733440