Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq200 163 4e-35 >seq200 Length=2828343 Score = 163 bits (180), Expect = 4e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 140508 AATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAAAGATCAACGCGGG 140567 ||||||||||| ||||||||| | | ||||||| ||| | |||||||||||||| || Sbjct 1660689 AATTTTTGTTTGGGAAAACACTTGGCTAGTGAAACTGATTTATTAAAAGATCAACGTGGA 1660748 Query 140568 TCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTTAGGTAAACCGTCT 140627 || || ||||| ||||| || ||||| | |||| ||||| |||||||| ||||| ||| Sbjct 1660749 TCCCCTGCATACATTTCACCTGATGTATTGTGCGGCAAACCTTATTTAGGAAAACCATCT 1660808 Query 140628 GATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCAATTTCCATTTTAT 140687 ||||||||||| | || || | | | ||| ||| ||| ||| ||||| ||||||||| Sbjct 1660809 GATATGTGGGCATTAGGCGTTGTACTATTTACTATGCTGTATGGTCAATTCCCATTTTAT 1660868 Query 140688 GATGCGTCTCCAACAGAGCTCTTTAGAAAAATAAA 140722 ||| ||| ||| |||| || | |||||||| Sbjct 1660869 GATAGCAGTCCTACACAGCTTTTCAATAAAATAAA 1660903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704564996814720