Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1554 107 2e-18 seq255 104 2e-17 seq771 98.7 1e-15 seq188 84.2 2e-11 >seq1554 Length=169980 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 148258 GATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACG 148317 |||| || || ||||| || || | | ||||||| || |||| || ||||| | | Sbjct 4674 GATTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAG 4615 Query 148318 GTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTA 148377 | |||| || ||||| ||||||||||| || || |||| ||||| ||||| ||| | Sbjct 4614 GCTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCA 4555 Query 148378 CCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCC 148437 || | || || |||| ||| | ||| ||||| ||||| || ||||| |||| Sbjct 4554 ATAGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCC 4495 Query 148438 AGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCA 148476 | || | ||||| || ||||||||||||||||||| Sbjct 4494 ATAGATCAGTTGGTGTGACATTCCACATGTCGTACTGCA 4456 >seq255 Length=939575 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || |||||||| |||||||||||| | ||| || || ||| Sbjct 827579 AAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATCTTCCAGC 827520 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | ||||||||||| || || |||||||| ||||| |||| Sbjct 827519 TGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATC 827460 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| || |||| | || || |||| ||||| ||||| || Sbjct 827459 TTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGTTTTTCCT 827400 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || ||||||||| Sbjct 827399 GTAAGGGTCTTCACAAAGATCTGCATG 827373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || |||||||| ||||| ||||| | ||| |||||| ||| Sbjct 828429 AAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCCAGC 828370 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| |||| || || || || || || ||||||||||| ||||| ||| Sbjct 828369 TGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTC-CTGAAT 828311 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | |||| ||| || | | || || || | |||| ||||| || Sbjct 828310 TTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTCCC 828251 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 828250 AGTGAGAGTCTTCACGAAGATCTGCAT 828224 >seq771 Length=410761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGCCCGCGTA 133528 ||||||| || || || ||| || || |||| || || ||||||||||| ||| | Sbjct 280041 CTTTCTGGATGTTATAGTCGG--ATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 280098 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 || || ||||| || || |||||||| ||||||||||| |||||| ||| | | Sbjct 280099 GATAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATT 280158 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| || |||| | ||| || || | ||||| || ||||| || || || || || Sbjct 280159 TTCAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCAC 280218 Query 133649 GAAAATCTGCAT 133660 ||| |||||||| Sbjct 280219 GAAGATCTGCAT 280230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||| ||||| || ||| || || |||| || || ||||||||||| ||| | | Sbjct 282890 TTCTGGATATTATAGTCGG--ATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 282947 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | || ||||| || || |||||||| |||||||| || |||||| ||| | | | Sbjct 282948 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | || |||| | ||| || || | ||||| ||| ||||| || || || || || | Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 133651 AAATCTGCAT 133660 | |||||||| Sbjct 283068 AGATCTGCAT 283077 >seq188 Length=1630868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || |||||||| | || | | | || || || | Sbjct 122939 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCA-TCTTCAAGTT 122881 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | || |||||| || || ||||| |||||||| || ||| | Sbjct 122880 GCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT-TGAATT 122822 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| ||| || | | ||| || || | ||||| ||| || || Sbjct 122821 TTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTCCCA 122762 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||| || ||||||||||||||| Sbjct 122761 GTCAAAGTCTTCACGAAAATCTGCATG 122735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408859506240