Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1118 116 9e-21 seq1554 96.9 8e-15 >seq1118 Length=1153400 Score = 116 bits (128), Expect = 9e-21 Identities = 118/151 (78%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||||| |||| ||| | ||| |||||||| |||| |||||||||| Sbjct 203494 TTTAATCGTCAACCATCTTTGCACAAACTTAGTATAATGGCTCACAAAGCCAAAGTATTA 203553 Query 305396 TCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | || || |||||||||| |||| | ||| || || ||||| ||||| ||||| || Sbjct 203554 GA-GCATAGAACATTTCGATTTAATGAATGTGTCTGCACCCCTTACAATGCTGATTTCGA 203612 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| |||||||||||| ||||| |||| ||| Sbjct 203613 TGGGGATGAAATGAATTTGCATTTACCACAA 203643 >seq1554 Length=169980 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 ||| ||||| ||| ||| |||||||| || || || ||||| ||||| || || Sbjct 3745 ACAGATTCCTGCTAGAGATGTTTGGTTCGCCATACTGAGGTCTCAAGTAGAAACAGGCAC 3804 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 || ||||| |||| ||||||||| |||||||||||| ||||| |||||||||| Sbjct 3805 GCCGTATATGCTGTACAAAGATCATTGTAATCGCAAATCCAATCAGCAACATTTAGGAAC 3864 Query 111134 AATTAAGTCTAGTAAT 111149 ||||||| ||||||| Sbjct 3865 AATTAAGAGTAGTAAT 3880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186782752866936