Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq188 138 7e-28 seq255 111 1e-19 >seq188 Length=1630868 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| || ||| || || || ||||||||||| || Sbjct 124102 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 124043 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||| ||||| ||||| ||||| | |||||| ||| | || Sbjct 124042 AGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 123983 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| ||| |||| || | |||||| || || || Sbjct 123982 ATTCCTTCTTTGTCTTGAATTTTAGCCTTC-ACATTTTCTATCGTGTCGGATGCCTCAAC 123924 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||||||||| || ||||||||||| |||||||||||||| Sbjct 123923 TTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | || || || ||||| |||||||| || ||||| || ||| Sbjct 124558 CCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAG 124499 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||| ||||||||||| | |||||| ||| | || Sbjct 124498 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 124439 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| |||||| ||| |||| || | ||||| | || || Sbjct 124438 ATTCCCTCTTTGTCTTGAATTTTAGCCTTC-ACATTTTCTATCGTGTCAGACGCCTCAAC 124380 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 124379 TTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| || ||| || || || ||||||||||| || Sbjct 123190 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123131 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||| ||||| ||||| | |||||||||| | || Sbjct 123130 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123071 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | || |||| || | ||||| | ||| || Sbjct 123070 ATTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123012 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || || || |||||||| Sbjct 123011 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| || ||| || || || ||||||||||| || Sbjct 123418 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123359 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||| ||||| ||||| | |||||||||| | || Sbjct 123358 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123299 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | || |||| || | ||||| | ||| || Sbjct 123298 ATTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123240 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || || || |||||||| Sbjct 123239 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| || ||| || || || ||||||||||| || Sbjct 123646 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123587 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||| ||||| ||||| | |||||||||| | || Sbjct 123586 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123527 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | || |||| || | ||||| | ||| || Sbjct 123526 ATTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123468 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || || || |||||||| Sbjct 123467 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| || ||| || || || ||||||||||| || Sbjct 122962 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 122903 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||| ||||| ||||| | |||||||||| | || Sbjct 122902 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 122843 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | || |||| || | || || || || || Sbjct 122842 ATTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTTTCAATCGTATCAGATGCCTCAAC 122784 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || || || |||||||| Sbjct 122783 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 >seq255 Length=939575 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || ||||| || ||||| |||||||| ||||||||||| | |||| || Sbjct 827810 ACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCG 827751 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || ||||| |||||||| ||||||||| | || | |||||||| || Sbjct 827750 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGG 827691 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || ||||| || | || || | ||| || || | ||||| ||||| Sbjct 827690 ATCTT-AGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATGGTTTT 827632 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| || || ||||| |||||||| Sbjct 827631 TCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || ||||| || ||||| |||||||| ||||||||||| | |||| || Sbjct 828038 ACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCG 827979 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || ||||| |||||||| ||||||||| | || | ||||||||||| | Sbjct 827978 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGA 827919 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | || || | ||| || || | || || ||||| Sbjct 827918 ATTTT-GGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTT 827860 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || |||||||||||| Sbjct 827859 CCCAGTCAGAGTTTTCACGAAGATCTGCATA 827829 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||||| || || || ||||| || || || ||||| || Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| |||| ||||| ||||| ||||| | ||| || ||||| | || Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || |||| || | || || | ||| || Sbjct 828330 ATGCCTTCTTTGTCCTGAATTTT-AGCTTTGACATTTTCAATCGTATCCGAAGCTTCAAC 828272 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | || || || |||||||||||| Sbjct 828271 TTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCATA 828223 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| || || ||||| || || ||||||||||| || || | | | || Sbjct 827585 AAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATCT 827526 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| || || || ||||| ||||| |||||||| || | || | ||||||||||| Sbjct 827525 TCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCC 827466 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || | | |||| || | || ||| | ||| || || | ||||| || Sbjct 827465 TGGATCTT-GGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGT 827407 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| | || || |||||||||||||| Sbjct 827406 TTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696083985920