Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq255 127 5e-24 seq188 102 2e-16 >seq255 Length=939575 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||||||||| ||||| | || || ||| ||| || Sbjct 827377 CAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCCGAT 827436 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| || || |||||||| ||| || ||| || Sbjct 827437 ACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAGCAG 827496 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| ||||||||||||| || | |||||||||| | Sbjct 827497 CGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAATATT 827556 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||| | |||||||||||||| Sbjct 827557 CAGAAAGAATCAACGCTTCATTTGGTTTTGAGACTTCG 827594 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||||||||| |||||| | ||||| ||| ||| || Sbjct 827605 CAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCAGAT 827664 Query 206233 ACAGTCGAATCAG-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| | |||||| ||||| ||||| |||||||| ||| || || || Sbjct 827665 ACTATTGAAAATGTTAAAGC-TAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAGCA 827723 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || | ||||| || ||||| | |||| |||||| | Sbjct 827724 ACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACAT 827783 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || |||||||||||| | ||| | ||||||| Sbjct 827784 CCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCG 827822 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || || ||||| ||| ||| || || | ||| Sbjct 827845 AAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCAGATACGATTGAAAAT 827904 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| ||| || || ||| | | ||||| Sbjct 827905 GTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAGCAACGTTTGATCTTT 827964 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||| || ||||| | |||| |||||| |||| || || ||| Sbjct 827965 GCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACATCCAAAAGGAATCT 828024 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | ||| | ||||||| Sbjct 828025 ACTCTTCACTTAGTTCTTCGACTTCG 828050 >seq188 Length=1630868 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||||||||| | ||||| || |||||| Sbjct 124335 CAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTCTGAC 124394 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| ||||| ||||| || ||| || Sbjct 124395 ACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAG 124454 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || |||||||| | ||||||||| | ||| | | || ||||| || Sbjct 124455 AGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAATATC 124514 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 || ||||| || ||||||||| | ||| | ||||| Sbjct 124515 CAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTT 124550 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || || |||||||| || ||||| | ||||| ||| || ||| Sbjct 124107 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 124166 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| |||||||| || |||||||| || || || Sbjct 124167 ACGATTGAAAATGTAAAAGCCAAA-ATTCAAGATAAGGAAGGAATCCCACCAGATCAGCA 124225 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || ||||| ||| | || ||||| | || || | || ||||| | Sbjct 124226 GAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAATAT 124285 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||||||||| | || | || ||||| Sbjct 124286 TCAGAAAGAATCTACTCTTCATTTGGTACTCAGGCTTCG 124324 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||||||||| | ||||| || || ||| Sbjct 123879 CAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATCCGAC 123938 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| ||||||||||| || ||| || Sbjct 123939 ACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAGCAG 123998 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||| | ||||| || | ||| | | ||||||||| | Sbjct 123999 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAACATT 124058 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||| || || Sbjct 124059 CAGAAGGAATCCACCCTTCATCTGGT 124084 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || || |||||||| || ||||| | ||||| ||| || ||| Sbjct 123651 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 123710 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| |||||||| || |||||||| || || || Sbjct 123711 ACGATTGAAAATGTAAAAGCCAAA-ATTCAAGATAAGGAAGGAATCCCACCAGATCAGCA 123769 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || ||||| ||| | || ||||| | || || | || || || | Sbjct 123770 GAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAATAT 123829 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||||||||| | || | || ||||| Sbjct 123830 TCAGAAAGAATCTACTCTTCATTTGGTACTCAGGCTTCG 123868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181790879251896