Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq255 107 2e-18 seq188 91.5 1e-13 seq1554 87.8 2e-12 >seq255 Length=939575 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||| | || | |||||||| |||||||| | | Sbjct 828023 GATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCA 827964 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| || ||||||||||| ||||||||||| || |||||| || | Sbjct 827963 AAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACA 827904 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || ||||| | || | ||||| |||||||||||||| Sbjct 827903 TTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTC 827844 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 827843 ACGAAGATCTGCAT 827830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||| | || | |||||||| |||||||| | | Sbjct 827795 GATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCA 827736 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| || ||||||||||| |||||||||||||| || || ||| | Sbjct 827735 AAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGGATCTTAGCTTTAACA 827676 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||| | | || ||||||| || | ||||| || || | || || Sbjct 827675 TTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTA 827616 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 827615 ACAAAAATCTGCATGCCT 827598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| ||||| ||||| || || || | || | || || Sbjct 828432 ACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCC 828373 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| | |||||||| |||||||| || || ||||||||||| || | Sbjct 828372 AGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCCTGA 828313 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | ||||| | | || ||||| | || | ||||| Sbjct 828312 ATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTC 828253 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | ||| |||||||| Sbjct 828252 CCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 >seq188 Length=1630868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | || || || ||||||||||| || | ||||| |||||| Sbjct 122944 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 122885 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | |||| | | ||| |||||||| || || ||||| ||||| | Sbjct 122884 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 122825 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | ||||| | | ||| || || | || | || || Sbjct 122824 ATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTC 122765 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTA 132129 ||||||| ||| || | |||||||||||||| ||| Sbjct 122764 CCAGTCAAAGTCTTCACGAAAATCTGCATGATTTA 122730 >seq1554 Length=169980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 146878 TCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACA 146937 ||||| |||| |||| || |||||||| || || | || || || || | |||| | Sbjct 4686 TCAAT-AAATGTGGATTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATA 4628 Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 || || ||| ||||||||| || || |||||||| || ||||| || || | || || Sbjct 4627 TTACTCGTGTAAGGCTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTC 4568 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTC 147054 ||||| ||||| | || ||||| |||| ||| | ||| || || || ||| Sbjct 4567 GGCATTGGCGCCAATAGTAAAGAATTCCGCACACCATGTTTTGCA---ATTTTTTCTTTC 4511 Query 147055 AAAGTTTGCCAGTCCCACATCGACGAG--GGCGTCACGTTCCACATGTCGTACTG 147107 | | | ||| ||||| | || || || || || ||||||||||||||||| Sbjct 4510 AGCGCTGCCCAATCCCATA--GATCAGTTGGTGTGACATTCCACATGTCGTACTG 4458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599427703360