Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq255 122 8e-23 seq188 109 5e-19 >seq255 Length=939575 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| |||||||| | ||| || || ||||| |||||||||| | |||| | Sbjct 827588 CTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCA 827529 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| ||||| ||||||||||| | |||| || || ||| Sbjct 827528 TCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTG 827469 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | || ||| | ||| ||||| | ||||| Sbjct 827468 TCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATT 827409 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || | || |||||||| |||||||| Sbjct 827408 GTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 >seq188 Length=1630868 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||||| |||||||||||||| | Sbjct 124104 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 124045 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || || ||||| || ||||| ||||||| ||||||||| | | Sbjct 124044 AAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTG 123985 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | || ||||| ||| ||| || |||| | || | | ||||||| | || Sbjct 123984 GGATTCCTTCTTTGTCT-TGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCA 123926 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||||||||| || || || ||||| ||||| |||||||||| Sbjct 123925 ACTTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATTC 123874 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| || ||||| || | | || || | || || || ||||| || ||||| Sbjct 124522 TCTTTTTGGATATTGTAGTCTGAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAA 124463 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||||| ||||||||| | || | | ||| ||||| ||| ||| || |||| | | Sbjct 124462 ATCAACCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCT-TGAATTTTAGCCTTCACATT 124404 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| || || || || | |||||||||||||| || || ||||| || Sbjct 124403 TTCTATCGTGTCAGACGCCTCAACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAAC 124344 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 124343 AAAGATCTGCATTC 124330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | ||| | |||||||| | ||| || || ||||| ||||| || | Sbjct 124332 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAG 124273 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||||| | || || ||||| || || ||||| ||||||| |||||| || | | Sbjct 124272 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 124213 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| || ||| ||| |||| | | || | | |||||| | ||| Sbjct 124212 GGATTCCTTCCTTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 124154 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| || || || || | ||| || || ||||||||||||| Sbjct 124153 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATTC 124102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | ||| | |||||||| | ||| || || ||||| || || || | Sbjct 123876 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAG 123817 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||||| | || || ||||| || || ||||| ||||||| |||||| || | | Sbjct 123816 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123757 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| || ||| ||| |||| | | || | | |||||| | ||| Sbjct 123756 GGATTCCTTCCTTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 123698 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| || || || || | ||| || || ||||||||||||| Sbjct 123697 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATTC 123646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||||| |||||||||||||| | Sbjct 122964 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 122905 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || ||||| || ||||| ||||||| |||||| || | | Sbjct 122904 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 122845 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| | | ||| ||| || || | | || | | ||| || | || Sbjct 122844 GGATTCCTTCCTTAT-CTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCA 122786 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || |||||||| ||||| || |||||||| Sbjct 122785 ACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||||| |||||||||||||| | Sbjct 123192 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123133 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || ||||| || ||||| ||||||| |||||| || | | Sbjct 123132 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123073 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| | | ||| ||| || || | | || | | |||||| | ||| Sbjct 123072 GGATTCCTTCCTTAT-CTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 123014 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| || || || || | ||| || || ||||||||||||| Sbjct 123013 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATTC 122962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||||| |||||||||||||| | Sbjct 123420 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123361 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || ||||| || ||||| ||||||| |||||| || | | Sbjct 123360 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123301 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| | | ||| ||| || || | | || | | |||||| | ||| Sbjct 123300 GGATTCCTTCCTTAT-CTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 123242 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| || || || || | ||| || || ||||||||||||| Sbjct 123241 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATTC 123190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||||| |||||||||||||| | Sbjct 123648 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123589 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || ||||| || ||||| ||||||| |||||| || | | Sbjct 123588 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123529 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| | | ||| ||| || || | | || | | |||||| | ||| Sbjct 123528 GGATTCCTTCCTTAT-CTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCA 123470 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| || || || || | ||| || || ||||||||||||| Sbjct 123469 ACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATTC 123418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782465398080