Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq255 143 3e-29 seq188 127 2e-24 seq1554 116 4e-21 >seq255 Length=939575 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| | || | ||| || || ||||||||||| |||||||||||| Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827769 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| ||||| ||||| || ||||| |||||||| |||||||| || || Sbjct 827768 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827709 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || || ||| || || | || || || | ||| || Sbjct 827708 ATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACT 827649 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||| || ||||| || ||||| ||||| ||||| Sbjct 827648 TCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| | || | ||| || || ||||||||||| |||||||||||| Sbjct 828056 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827997 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| ||||| ||||| || ||||| |||||||| |||||||| || || Sbjct 827996 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827937 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||||||||| ||||| || | || || || | ||| || Sbjct 827936 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACT 827877 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||||| || || | |||||| ||||| || ||||| Sbjct 827876 TCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||| ||| || | || ||||| ||||| || ||||| ||||| ||| | Sbjct 827600 CCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAA 827541 Query 134547 A-CGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | || || ||||| ||||| ||||| ||||| |||||||| || || || Sbjct 827540 AGCGTTCTTCCA-TCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 827482 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || || || || ||||| || | ||| ||||| | ||| || Sbjct 827481 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAAC 827422 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || | || || || || || ||||| Sbjct 827421 CTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| || ||||| || || || || || ||| || ||||| Sbjct 828427 GTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCCAGCTG 828368 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| || ||||| | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 828367 TTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCCTGAATTTT 828308 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || | || || || | ||| || || ||||| || ||||| || || Sbjct 828307 AGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTCCCAGT 828248 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| || ||||| || ||||| Sbjct 828247 GAGAGTCTTCACGAAGATCTGCAT 828224 >seq188 Length=1630868 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||||||||| ||||||||||| || Sbjct 124104 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 124045 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| | ||| || || || || || ||||| ||||| | |||||| || || | Sbjct 124044 AAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTG 123985 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||||||||| || || || | |||||||| | || | Sbjct 123984 GGATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAA 123925 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || || ||||| || ||||| |||||||| || || |||||| Sbjct 123924 CTTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || || ||||| | || | ||| || || ||||| ||||| || |||||||| Sbjct 124561 TTTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCT 124502 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || | || || || || || || ||||||||||| | |||||| || || Sbjct 124501 GAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 124442 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| ||||||||||| || || || | ||||| |||| || Sbjct 124441 GGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCA 124382 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || |||||||| ||||| |||||||| || || |||||| Sbjct 124381 ACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||||||||| ||||||||||| || Sbjct 123192 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123133 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || || || || ||||| ||||| | ||||||||| || | Sbjct 123132 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123073 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | ||||| || | ||| | Sbjct 123072 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 123013 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || | ||| || ||||| || |||||| Sbjct 123012 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||||||||| ||||||||||| || Sbjct 123420 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123361 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || || || || ||||| ||||| | ||||||||| || | Sbjct 123360 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123301 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | ||||| || | ||| | Sbjct 123300 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 123241 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || | ||| || ||||| || |||||| Sbjct 123240 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||||||||| ||||||||||| || Sbjct 123648 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123589 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || || || || ||||| ||||| | ||||||||| || | Sbjct 123588 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123529 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | ||||| || | ||| | Sbjct 123528 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 123469 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || | ||| || ||||| || |||||| Sbjct 123468 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||||||||| ||||||||||| || Sbjct 122964 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 122905 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || || || || ||||| ||||| | ||||||||| || | Sbjct 122904 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 122845 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | || || || | || | Sbjct 122844 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAA 122785 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || ||||| || |||||||| ||||| Sbjct 122784 CCTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| || ||||| |||||||| | || | | | | || || ||||| Sbjct 124306 TGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCA-TCCTCAAGCTG 124248 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | ||||||||| || || || ||||| || ||||||||||| Sbjct 124247 TTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 124188 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | ||||| || | ||| || || || || ||||| || || || Sbjct 124187 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 124128 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| || ||||| || |||||| Sbjct 124127 AAGAGTCTTGACGAATATCTGCATT 124103 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| || ||||| || ||||| | || | | | | || || ||||| Sbjct 123850 TGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCA-TCCTCAAGCTG 123792 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | ||||||||| || || || ||||| || ||||||||||| Sbjct 123791 TTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123732 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | ||||| || | ||| || || || || ||||| || || || Sbjct 123731 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 123672 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| || ||||| || |||||| Sbjct 123671 AAGAGTCTTGACGAATATCTGCATT 123647 >seq1554 Length=169980 Score = 116 bits (128), Expect = 4e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 8755 ATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGG--AGCGATT 8812 |||||||| |||||||||||||||||||| || || | | ||| ||||| |||| Sbjct 4452 ATATTGCAGTACGACATGTGGAATGTCACACCAACTGATCTATGGGATTGGGCAGCG--C 4509 Query 8813 TGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCA 8872 ||||| |||||||| || ||| |||| ||||| | | |||| ||||| | Sbjct 4510 TGAAAGAAAAAATTGCAAAACATGGTGTGCGGAATTCTTTACTATTGGCGCCAATGCCGA 4569 Query 8873 CCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACG 8932 | ||| ||||||| ||||| |||| || |||||||| ||||||| | ||| | || Sbjct 4570 CGGCCTCGACTGCACAAATTTTGGGCAATAACGAATCAATTGAGCCTTACACGAGTAATA 4629 Query 8933 TGTACGTGAGACGAGTGTTGGCCGGCGATTTT 8964 |||||||||| || || ||| | || || ||| Sbjct 4630 TGTACGTGAGGCGCGTTTTGTCTGGAGAATTT 4661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505385916659520