Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq211 167 3e-36 seq1554 149 9e-31 seq648 104 3e-17 seq295 96.9 5e-15 >seq211 Length=255845 Score = 167 bits (184), Expect = 3e-36 Identities = 293/426 (69%), Gaps = 3/426 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| |||||||||||| ||||| ||||||||||| | |||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || ||||| ||| ||| |||||||| |||||||| ||||| || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 ||| | | ||| | || | ||| |||| ||||| || ||||||| | Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCAC 39875 |||| || || || || | | || || ||||| |||||| ||| | || || Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 || | | |||| | ||| | || |||||||||||| || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 | || ||||| || || || || | |||||| || | ||| || ||| || || | || Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 | | | ||| ||||| || || ||||| || |||||||| ||||||||||| | Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 40056 TAAAAT 40061 |||||| Sbjct 251804 TAAAAT 251799 >seq1554 Length=169980 Score = 149 bits (164), Expect = 9e-31 Identities = 230/328 (70%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 69114 AATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATT 69173 |||||| |||||||| || | | |||||||| ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 69174 AATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAG 69233 |||| || | ||| || ||||| || |||| ||| || |||| ||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATTTTTGTAACAGCCTTCAGTTTTTC 3992 Query 69234 AAAATCAAATCGTCCATCTA-------TAACAAACATATTCAGTGCTACAGATGCTAGAT 69286 ||||||| || ||| | | | ||||||||||| | || | ||||| | | Sbjct 3991 AAAATCATAT-GTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAAGT 3933 Query 69287 TACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTAC 69346 |||| ||||| || || | || | ||| ||| ||||| ||||||||||| |||||||||| Sbjct 3932 TACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACTAC 3873 Query 69347 ATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAA 69406 || || || || | || ||||||||| || ||||| || ||||| || | Sbjct 3872 TCTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGATCTTTGTACAGCA 3813 Query 69407 TAAACGGAGTACCAGTTTCAATCTGAGA 69434 || |||| || || ||||| | ||||| Sbjct 3812 TATACGGCGTGCCTGTTTCTACTTGAGA 3785 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||||||||| |||||||| |||||| | | |||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| || ||||| || | ||||||||||||||||| ||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 || ||||| | || | |||| ||||||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 68971 CCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAA 69030 ||||| | || ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct 4327 CCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTTTCGAAA 4268 Query 69031 ATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAAT 69090 || | |||| || | ||| ||||| ||| || || |||||| | | | || |||| Sbjct 4267 ATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAAAGAAAT 4208 Query 69091 GCATCTGCCAATCCCTGAACCCCAATACC 69119 ||||| ||||| ||||| | || ||||| Sbjct 4207 GCATCGGCCAAGCCCTGTATTCCTATACC 4179 >seq648 Length=307961 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 69254 TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTG 69313 ||||||||||||||| ||||| || ||| ||||| ||||||| |||| | ||| | Sbjct 3078 TAACAAACATATTCACTGCTATCGAGGCTGAGTTACAGACTGCTATTTCATCACAATCGG 3137 Query 69314 CATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGAT 69373 |||||||||||| || | | | | ||| | | | |||||||||||| ||||||||||| Sbjct 3138 TATATTGTATTATATCAGCAGAGAAATTTCCTCCTCTGATAGTCCCCAAATTTTGCTGAT 3197 Query 69374 TACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAG 69433 | || ||||| || || || || ||| | || || ||||| | |||| Sbjct 3198 TGGATTTCCGATTACAATGATCTTTATACAGCATACAAGGTAATCCTGTTTCTACTTGAG 3257 Query 69434 ATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT-TACGGTCTTGTAACGCTTCTCT 69492 ||| | || | | ||| || ||||||| ||| | | | ||| |||||||| ||| Sbjct 3258 ATTTTAATATGGCATACCATACATTCCTAGCAGGTATCTGCCG-CTTATAACGCTTTTCT 3316 Query 69493 TTTTCATAT 69501 || || ||| Sbjct 3317 TTCTCGTAT 3325 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 68948 ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 |||| | ||| | | ||| || ||||| | | || | ||| ||||||||||| || | Sbjct 2679 ATCCTTCATAAGATGAATATGGCCCTTCATTCTGAGAAATTTCGCAACTTGCCTCCAAAG 2738 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 || | || || | ||||||||||| | |||| || | ||| || || || |||| Sbjct 2739 CAGCATAGTACAAAGTTTCGAAAATTTGAATATTAAGTTTTTGAGCGTCCTCGCTTTCGA 2798 Query 69068 ATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 |||||||| | | | |||||||||||||||||| || || | |||||||| Sbjct 2799 ATGGATAACGCATTAAAATAAATGCATCTGCCAAACCTTGTATTCCAATACC 2850 >seq295 Length=3859974 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 70330 ACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCT 70389 ||| ||||||| ||||| |||||||| || ||||||||||| || ||||| |||||| Sbjct 1467402 ACACCACTAAAACTCTTTTTCGTTTCCTTATGCAAATTTGATATTGCCATTCTAGCTGCT 1467461 Query 70390 AGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTA 70449 | || ||||| || | ||||| |||||| ||||| || |||| ||||| | || Sbjct 1467462 AATATCGCATAATCTGCATGTTCTGTAGTCATGGTAGCAGCAGTTTCAGCAGCAAGATTA 1467521 Query 70450 TCTAATTCTATAGTTGTAACTCC 70472 || || || || ||||| | ||| Sbjct 1467522 TCCAACTCCATTGTTGTTATTCC 1467544 Score = 86.0 bits (94), Expect = 9e-12 Identities = 229/347 (66%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC 69221 |||||| ||||| ||| |||| ||| || | |||||| ||| ||| | || Sbjct 1465809 AGGATACCAATTAGCATCGATAAGTTTGTTTAAATTTCGTGTTACAGTTTTTGTAATGTT 1465868 Query 69222 CTTTAGTTTGAGAAAATCAAAT--CGTCCATCTA----TAACAAACATATTCAGTGCTAC 69275 |||||| || ||||||| || | || | | |||||||| |||| | |||| Sbjct 1465869 CTTTAGCTTTTCAAAATCATATGTCTTCTCTGCAGTATTAACAAACTTATTTACAGCTAT 1465928 Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACA 69335 ||||||| | |||| ||||||| || |||| ||| ||||||||| || || | | | Sbjct 1465929 CGATGCTAAACTACAGACTGCTATTTCGTTAGCGCTTGAATATTGTATAATATCAGCAGA 1465988 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 | ||| | | ||| || || |||| ||||||||||| |||| ||||| || Sbjct 1465989 GAAATTGCCTCCTTTAATTGTTCCCAAGTTTTGCTGATTGGACTTTCGATTACAATGATC 1466048 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 |||||| | ||| || || ||||| | ||||| || | || || ||| || Sbjct 1466049 CTTGTATAACATATGAGGTAAGCCTGTTTCTACCTGAGCTTTTAATATTGAGGACCATAC 1466108 Query 69456 GACCCTAGCATTTA--TTACGGTCTTGTAACGCTTCTCTTTTTCATA 69500 ||| |||| || | ||| ||| ||||| || || |||| || Sbjct 1466109 ATCCCGAGCAGGTAACTGACG--CTTATAACGTTTTTCAATTTCGTA 1466153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891833352640