Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq211 147 2e-30 seq502 123 2e-23 seq765 107 2e-18 seq1819 96.9 3e-15 >seq211 Length=255845 Score = 147 bits (162), Expect = 2e-30 Identities = 275/397 (69%), Gaps = 19/397 (5%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 ||||||||||| || |||||||||||||| || || || || |||||||| ||| Sbjct 251798 CATTTTATATCCCATGTATTGGCGTTTTTTGCAGCATCAGATGGTATTGTCAATGAGAAT 251857 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | || ||||| |||||||| ||| || | |||||||| || || ||||| ||| Sbjct 251858 CTAGTAGAACGGTTCAGTCAAGAAGTCCAAGTAACGGAAGCACGGTGCTTCTATGGTTTT 251917 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||| || || |||||| | || || |||||||| || || ||| | || | |||| Sbjct 251918 CAAATAGCAATTGAAAATGTACACTCAGAAATGTATTCCCTCCTTATAAACACATTCATC 251977 Query 44015 AAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACAGTACCTGCGAT--T 44071 | ||| | |||| | || | || ||||| || || || | |||||| | | Sbjct 251978 AGTAATGCCGAAGAGAGGGATTTTCTCTTCAATGCCATCGAGAATCTTCCCTGCGTTGCT 252037 Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA------TTCTTTTGGA 44125 ||| ||||| | |||||| | || ||||| ||| |||| |||||| | Sbjct 252038 AAA---AAAGCCAATTGGGCCTTAAATTGGAT---TTCGCATGACACAGCAACTTTTGCA 252091 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTT-GCGG 44183 ||||| | | ||||| |||| || ||||| || ||| ||||| | | |||| || | Sbjct 252092 GAACGTGTGATTGCGTTCGCAGCGGTAGAAGGAATCTTC--TTCAGTGGTAGTTTCGCTG 252149 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 | || |||||| | |||||||| ||| | |||||||| Sbjct 252150 CTATCTTTTGGCTGAAGAAACGTGGTATCATGCCTGG 252186 >seq502 Length=146425 Score = 123 bits (136), Expect = 2e-23 Identities = 182/255 (71%), Gaps = 12/255 (5%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| ||| | || ||||| | ||||||| ||| ||| || ||| | |||||| Sbjct 100166 TTTCCATTGTTGACGACAAAGCGTGTCTTTTGGAGAGGGGTTGTGGAGGAATTATTATGG 100107 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||||| ||| | ||||||||||| || | ||| | ||| || || |||||| || Sbjct 100106 TTTATCAGAGGATCGACTAATGCTAAAGAACTGTCAAGTAAAGGTGTTCATATTTGGGAT 100047 Query 40812 GCGCACAGTTC---TAAAAC---ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAA 40865 || | ||||| | || | ||| | | || || ||| ||| |||| ||| Sbjct 100046 GCAAATAGTTCACGTGAATTTCTAAATTCCTGTGGC-TATGATGACA-----GGGAGGAA 99993 Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 |||||||| |||||||||||||||||||| | |||| ||||||| ||| | ||| | | Sbjct 99992 GGTGATCTCGGTCCTGTTTATGGATTTCAATGGCGAAATTTTGGTGCACAGTATATCGAT 99933 Query 40926 ATGTACTCTGATTAT 40940 ||| || |||||||| Sbjct 99932 ATGAACACTGATTAT 99918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || ||||| | || || || ||||||||| | ||||| ||| |||| Sbjct 99745 ATGGCACTGCCTCCATGTCACT-GTCTCGTACAATTTTACGTTAGTAATGGAGAATTGTC 99687 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 |||||| | ||||||||| | ||| ||||||||||| || || ||||| || || Sbjct 99686 GTGTCAACTCTATCAAAGAAGTGCTGATATGGGACTAGGAGTGCCATTTAATATTGCTTC 99627 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || || |||| || |||||| | ||||| || || Sbjct 99626 GTACTCTTTGCTTACTTATATGCTGGCACATGTCAC 99591 >seq765 Length=797479 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---GT 19605 || || ||||| || | ||||| | || || || ||||| ||||||| | || Sbjct 158067 TTACATATTATCATTTTTGATGAGATCGATGCTATTTGTAAAGCAAGAGGTAGCGTGGGT 158008 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||||| ||||| || ||||| |||||| | |||||||| | || |||||| Sbjct 158007 GGAAACACGGGAGTTCATGATACCGTTGTTAATCAATTACTGTCAAAGATCGATGGTGTT 157948 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| ||||||||||| || ||||||| |||||||||||| || | || || Sbjct 157947 GAACAATTGAATAATATTCTAATTATTGGAATGACTAATAGAAGAGACATGATTGATGAA 157888 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAA 19753 |||||| |||| || || | |||||| ||| Sbjct 157887 GCCTTACTACGTCCTGGCAGATTGGAAGTAA 157857 >seq1819 Length=565358 Score = 96.9 bits (106), Expect = 3e-15 Identities = 186/273 (68%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 19258 AAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTC 19317 |||||||| || || || || ||||| || | ||| | |||||| | |||| || Sbjct 14379 AAAGAGTTCAGTGCTATTTTCCGAAGAGCTTTCGCGTCAAGAGTTTTTCCCCCAGAAGTG 14320 Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 | | || || || || || || ||| || |||| | || || || || || | Sbjct 14319 GTCATTCAGTTAGGCTGCAAGCACGTTAAGGGTATTTTATTGTACGGTCCTCCAGGAACT 14260 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAA 19434 |||||||| | || || ||| || | | | ||| | ||| | ||||| || Sbjct 14259 GGAAAAACCCTCATGGCAAGACAAATCGGCATGATGTTAAATGCAAGAGAACCT---AAG 14203 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 || ||||||||||| ||||| || |||||||||||||| || |||| ||| | ||| Sbjct 14202 ATAGTAAATGGTCCACAAATCCTAGATAAATATGTAGGTGAAAGTGAAGCTAATATTCGA 14143 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 | |||||||||| |||||||||||| | ||| Sbjct 14142 AGACTGTTTGCTGATGCTGAAGAAGAAGAGAAA 14110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446428265880