Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1554 113 4e-20 seq771 113 4e-20 seq255 109 5e-19 seq188 104 2e-17 >seq1554 Length=169980 Score = 113 bits (124), Expect = 4e-20 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 130745 AAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTC 130804 ||||| ||||| | |||||| || |||| || ||||| || ||||| || || ||| Sbjct 4681 AAATGTGGATTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTC 4622 Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 ||| | || |||| |||||||| ||||| || |||||||| || | || || ||||| Sbjct 4621 GTGTAAGGCTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATT 4562 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924 |||| || || |||||| || | ||| || | | |||||| |||| | || Sbjct 4561 GGCGCCAATAGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCC 4502 Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATC 130965 |||||||||||| || ||| ||||| |||||||| || Sbjct 4501 CAATCCCATAGATCAGTTGGTGTGACA---TTCCACATGTC 4464 >seq771 Length=410761 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAAT 27118 || || ||||| |||||| | |||| || | ||||| ||||| || || ||| | || Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTA-CGACCATCTTCCAGCTGCTTGCCAGCGAAGAT 282948 Query 27119 GAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTC 27178 ||||||||||||||||| || | ||| || ||||| ||||||| |||| |||| Sbjct 282949 AAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTC 283008 Query 27179 TACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAA 27238 || ||| || | || ||||| || || || || | |||||||| || || |||||||| Sbjct 283009 TATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAA 283068 Query 27239 GATTTGCAT 27247 ||| ||||| Sbjct 283069 GATCTGCAT 283077 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 |||| || || || |||||| | |||| || | ||||| ||||| || || ||| | Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTA-CGACCATCTTCCAGCTGCTTGCCAGCGAAG 280099 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || ||||||||||||||||| || | ||| || || || ||||||| || | || Sbjct 280100 ATAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTT 280159 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||| || | || ||||| || || || |||| |||||||| || || ||||| Sbjct 280160 TCAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACG 280219 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 280220 AAGATCTGCAT 280230 >seq255 Length=939575 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | |||||| || | || || ||||| |||||||| || || Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | |||| || |||||||| |||||| |||| ||||| |||||||| || || Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | |||| | || || | ||||||||| Sbjct 828330 ATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACT 828271 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| |||| ||| || || ||||| ||||| ||||| |||||| Sbjct 828270 TCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCATA 828223 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || || || | ||||| || ||||| || ||||||||| Sbjct 828058 TGCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 827999 Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || |||||||||| |||||||| || | || | ||| || ||||| || Sbjct 827998 AGAGTGTCCTGC-CGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 827940 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || || ||| || | |||| | || |||| ||||| Sbjct 827939 GGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCT 827880 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||||| || || | ||| || |||||||||||||| ||||| |||||| || Sbjct 827879 ACTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCATACCT 827826 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | | ||| |||||||| | ||| || ||||| ||||||||||| ||| Sbjct 827602 TGCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGG 827543 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| ||||| || || || | || | ||||| || || || | Sbjct 827542 AAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTG 827483 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||||||| || | |||| | || || | ||||||| Sbjct 827482 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAA 827423 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||| || || || || ||||||||||| ||||| Sbjct 827422 CCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 >seq188 Length=1630868 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||||||||| | ||||| ||||| |||||||||||||| | | ||||| || | || | Sbjct 124313 TACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGC-CATCCT 124255 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | |||||||| || || | || | | ||| ||||| || || | || || ||||| Sbjct 124254 CAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTT 124195 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || ||| ||| | |||| | ||||||| |||||||||||| || || || | | Sbjct 124194 GAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCT 124135 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| || || || || ||||| Sbjct 124134 TTCCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||||||||| | ||||| ||||| |||||||| ||||| | | ||||| || | || | Sbjct 123857 TACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGC-CATCCT 123799 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | |||||||| || || | || | | ||| ||||| || || | || || ||||| Sbjct 123798 CAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTT 123739 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || ||| ||| | |||| | ||||||| |||||||||||| || || || | | Sbjct 123738 GAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCT 123679 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| || || || || ||||| Sbjct 123678 TTCCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924166517312