Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq502 84.2 2e-11 >seq502 Length=146425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/167 (73%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 111771 CTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAA 111830 || ||||||||||| ||||| | ||| || || || | | ||| |||||| ||||| Sbjct 99581 CTTCAAACCAGTGACATGTGCCAGCATATAAGTAAGCAAAGAGTACGAAGCAATATTAAA 99640 Query 111831 TGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT-TATTTT 111889 |||||| ||||| |||||||| | ||||||||| || ||||| || | || | || Sbjct 99641 TGGCACTCCTAGTCCCATATCAGCACTTCTTTGATAGAGTTGACACGACAATTCTCCATT 99700 Query 111890 GTGACACATAAAATTGACAAAGTACA-TGACAAGGAGGCAATGCCAT 111935 | || |||||||| || ||| ||||| ||||||| |||||| Sbjct 99701 ACTA-ACGTAAAATTGTACGAG-ACAGTGACATGGAGGCAGTGCCAT 99745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/228 (69%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 112068 TGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC--CGGGGCTGT- 112124 ||| ||| | | || |||||| |||||||||| ||| || ||||| || | |||| Sbjct 99945 TGCACCAAAATTTCGCCATTGAAATCCATAAACAGGACCGAGATCACCTTCCTCCCTGTC 100004 Query 112125 ATCTGGAAATTGCTCTCT---ATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181 ||| || || | | ||| | || |||| | | ||| | || |||||| | Sbjct 100005 ATC-----ATAGC-CACAGGAATTTAGAAATTCACGTGAACTATTTGCATCCCAAATATG 100058 Query 112182 CACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTC 112241 || |||||| ||| | ||| | ||||| || |||||||| |||||||||| ||||| Sbjct 100059 AACACCTTTACTTGACAGTTCTTTAGCATTAGTCGATCCTCTGATAAACCATAATAATTC 100118 Query 112242 TTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 |||||||||||| |||| | || | || || || | || |||||| Sbjct 100119 CTCCACAACCCCTCTCCAAAAGACACGCTTTGTCGTCAACAATGGAAA 100166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391936160970088