Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq211 89.7 6e-13 >seq211 Length=255845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/287 (68%), Gaps = 5/287 (2%) Strand=Plus/Plus Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 ||||| || | ||| || ||| | || | | || ||| || | ||||||| || | Sbjct 251939 CACTCAGAAATGTATTCCCTCCTTATAAACACATTCATCAGTAATGCCGAAGAGAGGGAT 251998 Query 59889 GGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 ||| ||| |||||| |||| | ||| || ||| ||||||| | |||||| | Sbjct 251999 TTTCTCTTCAATGCCATCGAGAATCTTCCCTGC-GTTGCTAAAAAAGCCAATTGGGCCTT 252057 Query 59948 GCAGTGGATGAGTCCTGG---AGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 | ||||| | || |||| | |||||| ||||| | || || || ||| || Sbjct 252058 AAATTGGATTTCGCATGACACAGCAACTTTTGCAGAACGTGTGATTGCGTTCGCAGCGGT 252117 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 ||||||||||||||| ||| ||| |||||| || ||||| || || ||||| | Sbjct 252118 AGAAGGAATCTTCTTCAGTGGTAGTTTCGCTGCTATCTTTTGGCTGAAGAAACGTGGTAT 252177 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||| || || | ||| |||||| | |||||| | || |||| Sbjct 252178 CATGCCTGGACTTACATTCAGCAACGAATTAATTTCCAGAGATGAGG 252224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511251437440