Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq904 89.7 6e-13 >seq904 Length=1011748 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/290 (68%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| |||||||| | || || | |||||| ||||| | || | || |||||||| Sbjct 329001 GTGAAAATGTATCGAGGACTTGCAGAATCCTTACCACCCGTCAATCTGGTACCAAACTGA 329060 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | |||| || || ||| |||||||||||||||| ||| | Sbjct 329061 CCAATGGGTTGAAGCACATTGATATTATTACTGCCAACGAAATTCTGAGCCAGATTAATT 329120 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || || || | ||||||||| || ||||||| || || || | |||| Sbjct 329121 ATAGTAGCCATAAGTGACATTTCACCGTGATGGTACGCCGAGTGTTCGGCAACTGATCCT 329180 Query 152209 GCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||| ||| || ||||| | || || | |||| || || ||||| | ||| | | Sbjct 329181 GCCAGCTGTGCTACCTTTACTTCACGTTTGTCA--TTACGTTTTAGACACGTGTACAAGA 329238 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 | || | || ||| || |||||||| | || | ||||| |||||| Sbjct 329239 CTTTTCTTTGACCTGGCTTAAAACCGTCTATCATATTTGGAATGGAACGC 329288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202483764800