Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq188 190 2e-43 seq771 150 2e-31 seq255 145 9e-30 >seq188 Length=1630868 Score = 190 bits (210), Expect = 2e-43 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || ||| | || || || || || || ||||| |||||| | Sbjct 124331 AATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTC 124390 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| |||||||||||||||| ||||| |||||||| || |||||||| Sbjct 124391 TGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCA 124450 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | ||||||||||| |||||||| || |||| ||||| || ||||||| || Sbjct 124451 GCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAA 124510 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 | ||||||| ||||| |||||||| |||| | || ||| | |||||| || |||| Sbjct 124511 TATCCAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTTAGGGGTGGAAAATGTTAA 124568 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| | || || ||||| || || |||||||||||| || Sbjct 122733 ATCATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGGCA 122792 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| |||| |||| | || || |||||||| || ||||| ||||| || ||||| Sbjct 122793 TCTGATACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGAT 122852 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | || |||||||| |||||||| || |||| ||||| || | || || Sbjct 122853 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTAC 122912 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 122913 AACATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 122963 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || ||| | || ||||| || || || ||||| |||||| || Sbjct 123875 AATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATC 123934 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| |||||||||||||||| ||||| || ||||| || |||||||| Sbjct 123935 CGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 123994 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| |||||||| || || | || || || | || || || Sbjct 123995 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAA 124054 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 124055 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 124103 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| || ||||| || || ||||| ||||| | Sbjct 122963 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123022 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | || || |||||||| || ||||| ||||| || ||||| || Sbjct 123023 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123082 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| |||||||| || |||| ||||| || | || || || Sbjct 123083 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123142 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 123143 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123191 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| || ||||| || || ||||| ||||| | Sbjct 123191 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123250 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | || || |||||||| || ||||| ||||| || ||||| || Sbjct 123251 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123310 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| |||||||| || |||| ||||| || | || || || Sbjct 123311 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123370 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 123371 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123419 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| || ||||| || || ||||| ||||| | Sbjct 123419 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123478 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | || || |||||||| || ||||| ||||| || ||||| || Sbjct 123479 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123538 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| |||||||| || |||| ||||| || | || || || Sbjct 123539 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123598 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 123599 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123647 >seq771 Length=410761 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || |||||||||||| | Sbjct 283078 AATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTTGAGGCTTC 283019 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| ||||||| || || || || ||||| || || ||||| || || Sbjct 283018 CGATACTATAGAAAATGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCGGATCA 282959 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || ||||| ||||| || || |||| |||||| || | |||||||| Sbjct 282958 ACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAA 282899 Query 27585 TGTCCAAAAGG 27595 | |||| |||| Sbjct 282898 TATCCAGAAGG 282888 Score = 149 bits (164), Expect = 7e-31 Identities = 149/192 (78%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||||||||| || |||||||||||| | Sbjct 280231 AATGCAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCTTC 280172 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | ||||| || || || |||||||| || || ||||| || || Sbjct 280171 CGATACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGATCA 280112 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || ||||| ||||| || || |||| |||||| || | |||||||| Sbjct 280111 ACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAA 280052 Query 27585 TGTCCA-AAAGG 27595 |||| ||||| Sbjct 280051 CATCCAGAAAGG 280040 >seq255 Length=939575 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| ||||| || || || || || || |||||||| | Sbjct 827371 ATCATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCT 827430 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| |||| | ||||| || || |||||||| || || ||||| || ||| Sbjct 827431 TCCGATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGAC 827490 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || |||||||| ||||| || || |||| | || || | || || Sbjct 827491 CAGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTAC 827550 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | || || ||||| || |||||| | || ||| | |||||||| || Sbjct 827551 AATATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGACTTCGCGGAGG 827600 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || || || ||||| | || || || | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | ||||| |||||||| ||||| || || ||||||||||| ||| Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||||||||| |||||||| || | | || || | ||||| || Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| |||||||| |||| | || ||||| || || Sbjct 828010 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 828056 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || || || || ||||| || || || | Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||| || || || || || || ||||||||||| ||| Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||||||||| |||||||| || | | || || | ||||| || Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| |||||||| |||| | || ||||| || || Sbjct 827782 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 827828 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || || ||||| ||||| || ||||| | Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||||||||| || || || || || || || Sbjct 828284 GATACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAA 828343 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||||||||| || || || || || ||||| | | || || | || |||||| Sbjct 828344 CAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAAT 828403 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || ||||| || ||||| Sbjct 828404 ATTCAGAAAGAATCAACCCTTCA 828426 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 |||||||||| ||||| ||| | || || |||||||| ||||| || |||| || || | Sbjct 828102 TTCCTCCAGATCAGCAACGTTTGATCTTCGCTGGTAAACAACTTGAAGATGGACGCACGC 828161 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 || ||||||| ||| ||||||||||||| || |||||| |||| || || ||||| |||| Sbjct 828162 TATCAGACTACAATATCCAAAAGGAATCAACGCTTCATTTAGTTTTACGACTTCGTGGTG 828221 Query 27632 G 27632 | Sbjct 828222 G 828222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296313333120