Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq188 127 1e-24 seq255 107 1e-18 >seq188 Length=1630868 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| |||||||| ||||| ||||| || || Sbjct 124093 AGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGG 124034 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || || ||||| || || | ||| ||||| || || | ||| || Sbjct 124033 CCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCT 123974 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || || | || ||||| ||| ||||| | ||| Sbjct 123973 TTGTCT-TGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGT 123915 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || ||||||||||| ||||| |||||||| Sbjct 123914 GATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| || | || || || ||||| || ||||| || || || ||||| Sbjct 124558 CCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAG 124499 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || ||||| || || | ||| ||||| || || Sbjct 124498 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 124439 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | |||||| |||||| ||| ||| | || || | || ||||| ||| ||| | Sbjct 124438 ATTCCCTCTTTGTCT-TGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGC-CTCAA 124381 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 124380 CTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Score = 102 bits (112), Expect = 5e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| |||||||| ||||| ||||| || || Sbjct 122953 AGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGT 122894 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || || | ||| || || || || | ||| ||| Sbjct 122893 CCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 122834 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||||| | ||| || || ||| || || | ||| Sbjct 122833 TTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGT 122775 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGATTGTA 34716 || || || || || || || ||||| |||||||||||| || | |||| Sbjct 122774 GATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGATTTACTGTA 122725 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| |||||||| ||||| ||||| || || Sbjct 123181 AGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGT 123122 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || || | ||| || || || || | ||| ||| Sbjct 123121 CCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 123062 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||||| | ||| |||||| | || ||||| | ||| Sbjct 123061 TTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGT 123003 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 123002 GATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| |||||||| ||||| ||||| || || Sbjct 123409 AGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGT 123350 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || || | ||| || || || || | ||| ||| Sbjct 123349 CCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 123290 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||||| | ||| |||||| | || ||||| | ||| Sbjct 123289 TTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGT 123231 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 123230 GATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| ||||| |||||||| ||||| ||||| || || Sbjct 123637 AGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGT 123578 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || || | ||| || || || || | ||| ||| Sbjct 123577 CCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 123518 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||||| | ||| |||||| | || ||||| | ||| Sbjct 123517 TTATCT-TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGT 123459 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 123458 GATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 >seq255 Length=939575 Score = 107 bits (118), Expect = 1e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || || || ||||| |||||||| ||||| || || || Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827769 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||| ||||||||||| ||||| || ||||| || || || || || Sbjct 827768 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827709 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | || || || ||| |||| || | |||||| | ||| || ||| ||| || | Sbjct 827708 ATGCCTTCTTTATCTTGGATC-TTAGCTTTAACATTTTCAATAGTATCTGAAGCT-TCGA 827651 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || ||||| || ||||| || || ||||||||||||||| Sbjct 827650 CTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCATG 827601 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | || || || ||||| |||||||| ||||| || || || Sbjct 828057 GCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 827998 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| | ||||||| ||||||||||| ||||| || ||||| || || || || || Sbjct 827997 GAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 827938 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCC 34656 | || || |||||| ||| ||| | || || | ||| || ||| ||| || Sbjct 827937 AATGCCTTCTTTGTCT-TGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCT-TCT 827880 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || ||||| || || | |||||||| || |||||||| Sbjct 827879 ACTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722020524408