Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq502 105 6e-18 >seq502 Length=146425 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118823 TATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGG 118882 |||| | ||| |||||| || ||||||||| ||||||||||| || ||||| || | Sbjct 99938 TATACTGTGCACCAAAATTTCGCCATTGAAATCCATAAACAGGACCGAGATCACCTTCCT 99997 Query 118883 ACCTAAAATCTAAACCTACTTTTCTCT-GAAATTCTTTTGACCCATTAGCATTCCAAATA 118941 ||| ||| | || || | | ||||||| ||| | ||| |||| ||||||| Sbjct 99998 CCCTGTCATCATAGCC-ACAGGAATTTAGAAATTCACGTGAACTATTTGCATCCCAAATA 100056 Query 118942 GCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGC 119001 ||| ||||| ||| ||| || |||| || || || || || | |||||| | | Sbjct 100057 TGAACACCTTTACTTGACAGTTCTTTAGCATTAGTCGATCCTCTGATAAACCATAATAAT 100116 Query 119002 TCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 ||||| ||||| ||||||||||| || ||||| || |||| |||||| Sbjct 100117 TCCTCCACAACCCCTCTCCAAAAGACACGCTTTGTCGTCAACAATGGAAA 100166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414466818362464