Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq255 95.1 9e-15 >seq255 Length=939575 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||||| ||||||||| |||||| | || || ||| | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 827890 GATACGATTGAAAAT--GTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATC 827947 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||| || |||||| | || |||| | | | ||||| |||| Sbjct 827948 AGCAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACA 828007 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||| | || || ||| | || | ||||| ||| Sbjct 828008 ACATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGGC 828057 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||||| ||||||||| ||| || | || || ||| || | Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAA-GCTTC 828282 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||||||||| | || || Sbjct 828283 GGATACGATTGAAAAT--GTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGAT 828340 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGAC-GAACGCAGCTTGTCCGATTA 27965 || ||||| ||||||| ||||| ||||| |||| ||| ||| | |||| || ||||| Sbjct 828341 CAACAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTT-TCTGATTA 828399 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| || | || ||||| | |||||| | || || Sbjct 828400 TAATATTCAGAAAGAATCAACCCTTCACTTGGTACTTCGTTTGAGGGGTGG 828450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853829943752