Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq255 174 4e-38 seq771 150 4e-31 seq188 122 2e-22 >seq255 Length=939575 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | ||||| || || ||||| || || || ||||| | ||| || Sbjct 827594 CGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTT 827535 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||||||||||||||| || ||||| | || || |||||||| |||| ||| Sbjct 827534 CTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCT 827475 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||||||||| || || ||||| || || || || |||||||||||| Sbjct 827474 TCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGG 827415 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || ||||| ||||| | |||||| Sbjct 827414 GTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || ||||| || || |||||||| | ||| |||||||| || Sbjct 828435 AGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCC 828376 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| ||||| || || |||||||| ||||| || | ||||| |||||| Sbjct 828375 TCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCC 828316 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || ||||| || || || || |||||| || |||||||| || Sbjct 828315 TGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTT 828256 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 828255 TTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||||| || || | ||||||||| || || ||||||||||| || || | || Sbjct 827826 TCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAG 827767 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||| || ||||| || || || || || ||||| | ||||| || || ||||||| Sbjct 827766 TGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAAT 827707 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| || || |||||||| ||| || ||||| || || || || ||| || || Sbjct 827706 GCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTC 827647 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| || | ||||| ||||| | |||||| Sbjct 827646 GAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 118 bits (130), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||||| || || | ||||||||| || || ||||||||||| || || | || Sbjct 828054 TCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAG 827995 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||| || ||||| || || || || || ||||| | ||||| || || ||||||| Sbjct 827994 TGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAAT 827935 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| || || || || || ||||| || || || || ||| || || Sbjct 827934 GCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTC 827875 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || || || ||||| || || || | |||||| Sbjct 827874 TAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 >seq771 Length=410761 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| ||||||||||| || | | || | |||||||||||||||||||| ||||||| Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| || ||||| || ||||| | ||||||||||| |||||||| || || |||| Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || |||||||| || ||||| ||||| ||||| || ||||| || | Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 280221 AGATCTGCATT 280231 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||| ||||| || | | || | |||||||||||||||||||| ||||||||| Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || ||||| || ||||| | |||||||| || |||||||| ||||| ||||| Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || || |||||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 211107 ACCTGCATTT 211116 | |||||||| Sbjct 283070 ATCTGCATTT 283079 >seq188 Length=1630868 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || || | ||||||||| || ||||||||||| || || || | || || | Sbjct 124550 AAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGTACG 124491 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| || ||||| || || || || | | || ||||| || || | ||| || Sbjct 124490 TCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTC 124431 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || || || ||||| ||||| || |||||||| ||||| || || || Sbjct 124430 TTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCAAGGGT 124371 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| || || || | || || ||||| | ||||||| Sbjct 124370 GATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159122653169240