Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq255 131 1e-25 seq188 123 2e-23 seq771 111 1e-19 >seq255 Length=939575 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || |||||||| |||||||||||||| || | | Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | || || || |||||||| | || |||||||| Sbjct 827662 GATACTATTGAAAATGTTAAAGC-TAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCA 827720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| || |||||||| ||||||| | || | ||| ||||| Sbjct 827721 GCAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAA 827780 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || | || |||||| Sbjct 827781 CATCCAAAAGGAATCTACTCTTCACTTAGTT 827811 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||| |||||||| |||||||| | || Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| |||||| ||||||||||| | || || |||||| Sbjct 828284 GATACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAA 828343 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| || ||||||||||| ||||| |||| | | || | ||||| || Sbjct 828344 CAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAAT 828403 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 828404 ATTCAGAAAGAATCAAC 828420 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || |||||||| ||||| ||||| ||||| | | Sbjct 827374 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCC 827433 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || ||||||||||| | || || || || Sbjct 827434 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAG 827493 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| ||||| || |||||||| | | | || | ||||||||| Sbjct 827494 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAAT 827553 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | ||||| ||||| || | || ||||| Sbjct 827554 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGACTTCGCGGAGG 827600 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || ||||| || || | ||||| || | | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || |||||| ||||||||||| | || |||||||| Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||||| ||||||| | || | ||| |||||| Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | || |||||| Sbjct 828010 ATCCAAAAGGAATCTACTCTTCACTTAGTT 828039 >seq188 Length=1630868 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || ||||| || |||||||| || | Sbjct 122963 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123022 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 123023 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123082 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||| | ||| ||| | |||||||| Sbjct 123083 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123142 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 123143 CATTCAGAAGGAATCCAC 123160 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || ||||| || |||||||| || | Sbjct 123191 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123250 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 123251 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123310 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||| | ||| ||| | |||||||| Sbjct 123311 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123370 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 123371 CATTCAGAAGGAATCCAC 123388 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || ||||| || ||||| || |||||||| || | Sbjct 123419 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123478 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 123479 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123538 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||| | ||| ||| | |||||||| Sbjct 123539 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123598 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 123599 CATTCAGAAGGAATCCAC 123616 Score = 118 bits (130), Expect = 7e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || |||||||| | || || ||||||||||| || |||||||| | | Sbjct 123875 AATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATC 123934 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || |||||| ||||||||||| | || ||||| || Sbjct 123935 CGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 123994 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||||| |||||| | |||||||| Sbjct 123995 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAA 124054 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 124055 CATTCAGAAGGAATCCAC 124072 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || |||||||| | || || ||||||||||| || |||||||| | | Sbjct 124331 AATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTC 124390 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || |||||| |||||||| || | || ||||| || Sbjct 124391 TGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCA 124450 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||| | ||| ||| | || ||||| Sbjct 124451 GCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAA 124510 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | || |||||| Sbjct 124511 TATCCAAAAAGAATCAACTCTTCACTTAGTT 124541 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || ||||| || || ||||| | | Sbjct 122736 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGGCATCT 122795 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 122796 GATACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 122855 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || ||||| ||||| | ||| ||| | ||||||||| Sbjct 122856 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAAC 122915 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 122916 ATTCAGAAGGAATCCAC 122932 >seq771 Length=410761 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| ||||| || || ||||| || || ||||| | | Sbjct 280231 AATGCAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCTTC 280172 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || || ||||| |||||| | || || ||||| Sbjct 280171 CGATACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGATCA 280112 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| || |||||||| | || || ||| ||| || || Sbjct 280111 ACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAA 280052 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 280051 CATCCAGAAAG 280041 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||| || || || ||||| ||||| || || ||||| || || ||||| | Sbjct 283079 AAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTTGAGGCTT 283020 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | || ||| | |||| | || || || || || |||||| | || || |||| Sbjct 283019 CCGATACTATAGAAAATGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCGGATC 282960 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || || || ||||| || |||||||| | || || ||| ||| || | Sbjct 282959 AACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATA 282900 Query 23789 ACATACAAAA 23798 | || || || Sbjct 282899 ATATCCAGAA 282890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001459883808