Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq255 134 3e-26 seq771 132 1e-25 seq1470 120 7e-22 seq188 120 7e-22 seq1976 116 9e-21 seq1605 113 1e-19 seq1322 98.7 2e-15 seq920 98.7 2e-15 seq318 93.3 1e-13 >seq255 Length=939575 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | || || || |||||||| || | ||||||||||| | ||| Sbjct 827594 CGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTT 827535 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||| ||||| ||||| | ||| || ||||| || ||||| ||| Sbjct 827534 CTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCT 827475 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| ||| ||| ||| || || || || | ||| || || | Sbjct 827474 TCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGG 827415 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| || || || || Sbjct 827414 GTGATTGTTTTTCCTGT 827398 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | ||| ||||| ||||| ||||||| ||||| |||| | || Sbjct 827823 ACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGT 827764 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| || || || ||||| ||||| | ||||| || || || ||||| || Sbjct 827763 CCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCC 827704 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||||||||| || ||| ||| || || ||||| | ||| || || | Sbjct 827703 TTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAG 827644 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || || || || || Sbjct 827643 AGTGATGGTTTTTCCTGTTAAGGTCTT 827617 >seq771 Length=410761 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| || || |||| || || | |||||||| |||||||| |||||||||| Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 |||| || ||||| || || || ||||||||||||||||||||||| ||| ||| || Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || || || || | || || || | ||||| ||||||||||| | || || | || Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 280221 AGATCTGCATT 280231 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||| || |||| || || | |||||||| |||||||| |||||||||||| Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || ||||| || || || ||||||||||| ||||||||||| ||||||| ||| Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || || || || | || || || | ||||| ||||||||||| | || || | || Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 225706 ACTTGCATTT 225715 | ||||||| Sbjct 283070 ATCTGCATTT 283079 >seq1470 Length=18367 Score = 120 bits (132), Expect = 7e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||| | || || ||||| ||| |||| ||||||||| | |||| ||| |||| || || Sbjct 1735 ATTGTAACTGCACATGCTTTTATTATAATTTTCTTTATAATTATACCGATTATAATTGGA 1794 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || || || ||||| |||||||||| |||| ||||||||||| || ||||| | Sbjct 1795 GGATTTGGTAACTGATTAATTCCTTTAATACTTGGAGCTCCTGATATAGCATTTCCTCGA 1854 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || |||||||| ||||||||||| || || || ||| Sbjct 1855 ATAAATAATATAAGATTTTGATTACTCCCCCCATCTTTA 1893 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||| ||||| || | || ||||| || || |||| Sbjct 2292 TTCTGGATGTCCAAAAAATCAAAATAAGTGTTGGTATAAAATTGGATCTCCCCCTCCTGC 2233 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || |||||||| ||||||| ||||||| ||| ||||||| Sbjct 2232 AGGGTCAAAAAATGTAGTATTTAAATTTCGATCTGTTAAAA 2192 >seq188 Length=1630868 Score = 120 bits (132), Expect = 7e-22 Identities = 174/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 225472 TTCTGAAATAAAATATTCTAACG--AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTT 225529 ||| ||| ||| || ||| | | ||||| || || | ||| ||||| |||||||||| Sbjct 124575 TTCGGAATTAACATTTTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTT 124516 Query 225530 GGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTC 225589 ||| |||||| || | | ||| | |||||||| || ||||| ||||| || || | | Sbjct 124515 GGATATTGTAGTCTGAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACC 124456 Query 225590 GTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGG 225649 || ||||| || || || || || |||||||| || || ||||||| ||| || | Sbjct 124455 TCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCG 124396 Query 225650 TGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTT 225709 |||| || | || || || | |||||||| || || || || ||||| | || | | Sbjct 124395 TGTCAGACGCCTCAACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCT 124336 Query 225710 GCATT 225714 ||||| Sbjct 124335 GCATT 124331 >seq1976 Length=19339 Score = 116 bits (128), Expect = 9e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||| | || || ||||| ||| |||| ||||||||| | |||| || |||| || || Sbjct 1715 ATTGTAACTGCACATGCTTTTATTATAATTTTCTTTATAATTATACCAATTATAATTGGA 1774 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || || || ||||| |||||||||| |||| ||||||||||| || ||||| | Sbjct 1775 GGATTTGGTAACTGATTAATTCCTTTAATACTTGGAGCTCCTGATATAGCATTTCCTCGA 1834 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || |||||||| ||||||||||| || || || ||| Sbjct 1835 ATAAATAATATAAGATTTTGATTACTCCCCCCATCTTTA 1873 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||| ||||| || | || ||||| || || |||| Sbjct 2272 TTCTGGATGTCCAAAAAATCAAAATAAGTGTTGGTATAAAATTGGATCTCCACCTCCTGC 2213 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || |||||||| ||||||| ||||||| ||| ||||||| Sbjct 2212 AGGGTCAAAAAATGTAGTATTTAAATTTCGATCTGTTAAAA 2172 >seq1605 Length=91930 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| Sbjct 49329 AAAATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATATGCAGAAATATCACCG 49388 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 ||||||||||| | || ||||||||| || | ||||||||| |||| |||| Sbjct 49389 GCTTGTGTTTCAATAATAGGTAAGGCAGTAATACTCCCACCACCATGTTTTTCATTT 49445 >seq1322 Length=110664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| |||| | |||||||||||||||| | ||||||||| |||||| | ||||| Sbjct 24176 TGAGAGGATGAACGGCCACATTGGGACTGAGACACGGCCCAAA-CTTCTACGGAAGGCAG 24118 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||| | |||| ||| ||||||||||||||| |||| ||| |||| ||||| Sbjct 24117 CAGTAGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGA 24065 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | Sbjct 23493 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 23552 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || |||||||| ||| || || | || Sbjct 23553 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTACTCAGGCGGAGTACTTAATGC 23612 Query 7855 GTTAGCT 7861 ||||||| Sbjct 23613 GTTAGCT 23619 >seq920 Length=66673 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| |||| | |||||||||||||||| | ||||||||| |||||| | ||||| Sbjct 4901 TGAGAGGATGAACGGCCACATTGGGACTGAGACACGGCCCAAA-CTTCTACGGAAGGCAG 4959 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||| | |||| ||| ||||||||||||||| |||| ||| |||| ||||| Sbjct 4960 CAGTAGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGA 5012 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | Sbjct 5584 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 5525 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || |||||||| ||| || || | || Sbjct 5524 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTACTCAGGCGGAGTACTTAATGC 5465 Query 7855 GTTAGCT 7861 ||||||| Sbjct 5464 GTTAGCT 5458 >seq318 Length=1430473 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||||||| || | ||| | || ||||| ||||||| |||||| || || || Sbjct 731319 ACGCAGTCTCAGAACCAAGTGCAATGTCGATTCCTTTTGGATATTGTAGTCCAGCAGGGT 731260 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| |||| ||||| ||||||||||| | ||||| ||||| || || ||||| Sbjct 731259 TCTACCATCCTCTAATTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATACC 731200 Query 225612 T 225612 | Sbjct 731199 T 731199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501008091344