Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1554 143 4e-29 seq211 132 7e-26 seq648 123 3e-23 >seq1554 Length=169980 Score = 143 bits (158), Expect = 4e-29 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 || || || || |||||||| | || |||||||| | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || | |||||||||||||||||| || | | ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||||| || || ||||||||||| ||||| || || || ||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 ||| ||| | | ||||||| || ||||| ||||| || | ||||||||| ||| Sbjct 4549 AAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATAGA 4490 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTG 77332 || | ||| |||| ||| | ||||| || Sbjct 4489 TCAGTTGGTGTGACATTCCACATGTCGTACTG 4458 Score = 132 bits (146), Expect = 7e-26 Identities = 222/319 (70%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 77522 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 |||||| |||||||| || | | |||| ||| |||||| ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 77582 AATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAG 77641 | || || | ||| |||||||| | | |||| ||| || |||| ||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATTTTTGTAACAGCCTTCAGTTTTTC 3992 Query 77642 AAAATCAAA------TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATT 77695 ||||||| | | || || | |||||||| || | ||| || ||||| | || Sbjct 3991 AAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAAGTT 3932 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 ||| ||||| || || | || | | ||| ||||| ||||| ||||| |||||||||| Sbjct 3931 ACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACTACT 3872 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAA 77814 || || || || | || ||| || ||| || ||| | |||| || || || || | Sbjct 3871 CTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGA-TCTTTGTACAGCA 3813 Query 77815 TAAACGGAGTCCCGGTTTC 77833 || |||| || || ||||| Sbjct 3812 TATACGGCGTGCCTGTTTC 3794 Score = 116 bits (128), Expect = 5e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 77379 CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAA 77438 |||||| || ||| ||||||||||| || ||||||||||| ||||| || ||||||||| Sbjct 4327 CCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTTTCGAAA 4268 Query 77439 ATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAG 77498 || | |||| || | ||| ||||| ||| |||||||||||| | | | || ||| Sbjct 4267 ATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAAAGAAAT 4208 Query 77499 GCATCTGCTAATCCCTGAACTCCAATACC 77527 ||||| || || ||||| | ||| ||||| Sbjct 4207 GCATCGGCCAAGCCCTGTATTCCTATACC 4179 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78738 ACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCT 78797 ||| |||| || | ||||||||| ||||| |||||||| || ||||| || ||||||||| Sbjct 2406 ACACCACTGAAAACTTTTTTTGTCTCCTTATGTAGATTGGACACAGCAATCCTTGCAGCT 2347 Query 78798 AGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATA 78857 | ||||||||||| | ||| | || || || ||||| | || || || | | || Sbjct 2346 AAGATAGCATAATCGGCATGCTTGGTGGTCATTGTAGCTGCAGTCTCAGCTGCAAGATTA 2287 Query 78858 TCTAACTCTATAGTTGTGACCCCATTATATAGTCC 78892 || ||||| | ||||| |||||| ||| || || Sbjct 2286 TCCAACTCGACTGTTGTTACCCCAGAATAAAGACC 2252 Score = 95.1 bits (104), Expect = 2e-14 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || |||||||| || | ||| | ||| ||| | || || || || || ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 || ||||| | || ||||| |||||||| || |||| || || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| |||||||| ||||| ||||| | ||| || ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 | ||| || | |||| || |||||||||||||| || ||||| |||||| | || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 78618 TAAATAATAACAGAATT 78634 |||| || ||||||| Sbjct 2803 TAAACTATTGCAGAATT 2787 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| ||||| |||||||| |||||| | | ||||| |||| | |||||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 |||| ||| | ||| || | ||||||||||| |||||||| ||||| || || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 || |||| | || | ||| ||||||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||| ||||||||||| | || ||||| ||||||| |||||||||||| | ||||| | Sbjct 3404 TATTTTTTTTAAGATCCAAGAATTCCATTATATCAGCATGCCATGGTTCCACGTATATAG 3345 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | ||||||||| || || || ||||| || | ||||| || ||||| ||| Sbjct 3344 CAAATGCTCCAGGTCTCTTGTTTCCACCCTGGTCAACATATCGTGCCACATTATTGAAAA 3285 Query 78196 CTCTCAACATTGGAATAATACCGT 78219 | | | ||||||| | ||||| Sbjct 3284 GTTTGAGTATTGGAACCACACCGT 3261 >seq211 Length=255845 Score = 132 bits (146), Expect = 7e-26 Identities = 284/424 (67%), Gaps = 3/424 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| |||||||||||| ||||| || || ||||| | |||||||| || Sbjct 252222 TCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCTTC 252163 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||| || || |||||| ||| ||||| || |||||||| || || || || Sbjct 252162 AGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACGCA 252103 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 | | | ||| | || | ||| || || ||||| | ||||||| || Sbjct 252102 ATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGGCT 252043 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTA 48401 || || || || || | | || || ||||| |||||||| | | || | | | Sbjct 252042 TTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGGCA 251983 Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 | | | | | || | ||| | || ||||||||| ||||| | |||||||||||| Sbjct 251982 TTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTGCT 251923 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 || ||||| || || || || | ||||| || | || || || || || ||||| Sbjct 251922 ATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTTCT 251863 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 | | ||||||||| || || ||||| || |||||||| || |||||||| ||| Sbjct 251862 ACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATATA 251803 Query 48582 AAAT 48585 |||| Sbjct 251802 AAAT 251799 >seq648 Length=307961 Score = 123 bits (136), Expect = 3e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 |||| ||||| ||| |||||||||| || ||||||| | | |||| | ||||| |||| Sbjct 2289 TATTTTTTATCTCAACATTCCACAAATTTTTCTCTGTCAGATCTCTCAAGAGATAGGGAT 2348 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | | | |||||||||| |||| || ||| || || | || || ||||| |||| Sbjct 2349 TTATAAATTGAAATTCTTCAGATGATGCTCGTGTGGTATACACGTTGCTCGTATAAGGTT 2408 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | |||||| |||||||||||| |||||||||||| | || ||||| | || | | Sbjct 2409 CAATAGATTCGCTGTTTCCCAAAACTTGAGCAGTAGACGTCGTAGGCATTGATGTGATTA 2468 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 |||| ||| | | |||| | | ||||| | ||| ||| | |||||||||| | Sbjct 2469 GTAAAGAATTGCGAACCCCATATTTCGCAATTTTTTTTTTAAGAGTTGTCCAATCCCATA 2528 Query 77299 GATCTG 77304 |||| Sbjct 2529 ATTCTG 2534 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACG 78511 || |||||| || ||||| || ||| ||||| || |||||| | || || | Sbjct 4094 TAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCAACTCT 4153 Query 78512 CATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTT 78571 ||| |||||||||||||||||||| || ||| ||||| || | || | ||| Sbjct 4154 CATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTT 4213 Query 78572 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGA 78631 ||||| |||||||| ||||| || || || |||||| | || || | || ||||| Sbjct 4214 TTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATTACAGA 4273 Query 78632 ATTTAGT 78638 ||||||| Sbjct 4274 ATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651641680640