Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1554 163 4e-35 seq211 150 3e-31 seq648 129 8e-25 >seq1554 Length=169980 Score = 163 bits (180), Expect = 4e-35 Identities = 218/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 75625 TTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCT 75684 |||||| |||||| || || | || || || ||||| |||||||| | ||||| Sbjct 4760 TTGAATTGATCCGTAATTAGCGACGATCTCGTTTTTCATCTCGTCATTCCAAAGGTTTCT 4701 Query 75685 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCT 75744 ||| || | | | || | | ||| |||||||||| |||||||||||||||||| || | Sbjct 4700 CTCTGTCAGATCCCTCAATAAATGTGGATTAACAACTTGAAATTCTCCAGACAAAACGCG 4641 Query 75745 TCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 75804 | ||| |||||||| || || || || | ||||| || || ||||||||||| || Sbjct 4640 CCTCACGTACATATTACTCGTGTAAGGCTCAATTGATTCGTTATTGCCCAAAATTTGTGC 4581 Query 75805 AGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 75864 ||| || || |||||||| || |||| | |||| ||| | | ||||||| || || Sbjct 4580 AGTCGAGGCCGTCGGCATTGGCGCCAATAGTAAAGAATTCCGCACACCATGTTTTGCAAT 4521 Query 75865 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTA 75924 ||| ||||| || | ||||||||| ||||| | |||| |||| ||| | ||||| Sbjct 4520 TTTTTCTTTCAGCGCTGCCCAATCCCATAGATCAGTTGGTGTGACATTCCACATGTCGTA 4461 Query 75925 TTG 75927 || Sbjct 4460 CTG 4458 Score = 132 bits (146), Expect = 7e-26 Identities = 222/319 (70%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 76117 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATT 76176 |||||| |||||||| || | | |||| ||| ||| || ||| |||| || |||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 76177 AATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAG 76236 |||| || | ||| |||||||| | |||| ||| || |||| ||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATTTTTGTAACAGCCTTCAGTTTTTC 3992 Query 76237 AAAATCAAAT------TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATT 76290 ||||||| || ||| || | ||||||||||| | ||| || ||||| | || Sbjct 3991 AAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAAGTT 3932 Query 76291 ACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACA 76350 ||| || || || || | || | | | ||| ||||| ||||| || || |||||||||| Sbjct 3931 ACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACTACT 3872 Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAA 76409 ||| || ||||| | || ||| || ||| || |||| |||| || || || || | Sbjct 3871 CTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGA-TCTTTGTACAGCA 3813 Query 76410 CAAACGGAGTTCCAGTTTC 76428 | |||| || || ||||| Sbjct 3812 TATACGGCGTGCCTGTTTC 3794 Score = 104 bits (114), Expect = 3e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || |||||||| || | ||| | ||| ||| | || || || || ||||| || Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || ||||| | || ||||| |||||||| ||| |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | ||||| || | ||| |||||||| ||||| | ||| || ||| || ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 | ||| || | |||| || |||||||||||||| || ||||| |||||| | || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 77213 TAAATAATAACCGAATT 77229 |||| || | ||||| Sbjct 2803 TAAACTATTGCAGAATT 2787 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 || || || || | || ||| ||||| ||||| ||||| || || || ||||| || ||| Sbjct 4333 TATGTGCCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTT 4274 Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 |||||||| | ||||||| | ||| ||||| ||| ||||| |||||| | | | | Sbjct 4273 TCGAAAATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAA 4214 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | ||||||||| || | ||||| | ||| ||||| Sbjct 4213 AGAAATGCATCGGCCAAGCCCTGTATTCCTATACC 4179 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| ||||| |||||||| |||||| | | ||||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||| | ||| || | ||||||||||| |||||||| ||||| || || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 || |||| | || | ||| ||||||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 >seq211 Length=255845 Score = 150 bits (166), Expect = 3e-31 Identities = 288/424 (68%), Gaps = 3/424 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| |||||||||||| ||||| || |||||||| | ||||| || || Sbjct 252222 TCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCTTC 252163 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| ||||| |||||| ||| ||||| || |||||||| || ||||| || Sbjct 252162 AGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACGCA 252103 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAGCC 46830 | | | ||| | || | || | ||| |||||| || ||||||| || Sbjct 252102 ATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGGCT 252043 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTA 46890 ||||| || || || | | || || ||||| |||||||| | | || || | Sbjct 252042 TTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGGCA 251983 Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 | | | |||| | ||| | || |||||||||||| || | |||||||| || Sbjct 251982 TTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTGCT 251923 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || ||||| || || || || | |||||| || | || || ||| || || ||||| Sbjct 251922 ATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTTCT 251863 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 | ||||||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 251862 ACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATATA 251803 Query 47071 AAAT 47074 |||| Sbjct 251802 AAAT 251799 >seq648 Length=307961 Score = 129 bits (142), Expect = 8e-25 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 |||| || |||||| |||||||||| ||| |||| || | | |||| | ||||| |||| Sbjct 2289 TATTTTTTATCTCAACATTCCACAAATTTTTCTCTGTCAGATCTCTCAAGAGATAGGGAT 2348 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 | | || |||||||||| |||| || ||| | || || | || || ||||| |||| Sbjct 2349 TTATAAATTGAAATTCTTCAGATGATGCTCGTGTGGTATACACGTTGCTCGTATAAGGTT 2408 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | |||||| |||||||||||| ||||||||| || | || ||||| | || | | Sbjct 2409 CAATAGATTCGCTGTTTCCCAAAACTTGAGCAGTAGACGTCGTAGGCATTGATGTGATTA 2468 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 |||| ||| | | |||| | | ||||| | ||| ||| | |||||||||| | Sbjct 2469 GTAAAGAATTGCGAACCCCATATTTCGCAATTTTTTTTTTAAGAGTTGTCCAATCCCATA 2528 Query 75894 GATCTG 75899 |||| Sbjct 2529 ATTCTG 2534 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 || |||||| || ||||| ||| ||| || || || |||||| | ||| || | Sbjct 4094 TAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCAACTCT 4153 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||| |||||||||||||||| ||| ||| ||| ||||| || | || | ||| Sbjct 4154 CATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTT 4213 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 ||||| |||||||| ||||| || || || |||||| | || || | || || || Sbjct 4214 TTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATTACAGA 4273 Query 77227 ATTTAGTTTG 77236 ||||||| || Sbjct 4274 ATTTAGTATG 4283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916790520320