Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq188 147 5e-30 seq771 123 6e-23 seq255 123 6e-23 >seq188 Length=1630868 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | |||||||||||| ||||| || || ||||| || | ||| |||| Sbjct 124321 AGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGG 124262 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| || || ||||| | ||||||||| || | | |||||||||| Sbjct 124261 CCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 124202 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | ||||||| || |||||||| || Sbjct 124201 TTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTG 124142 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || |||||||| ||||| | ||||||| Sbjct 124141 ATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 124103 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | |||||||||||| ||||| || || || || || | ||| |||| Sbjct 123865 AGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGG 123806 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| || || ||||| | ||||||||| || | | |||||||||| Sbjct 123805 CCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCC 123746 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | ||||||| || |||||||| || Sbjct 123745 TTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTG 123686 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || |||||||| ||||| | ||||||| Sbjct 123685 ATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123647 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || || || || || ||||||||||| | | ||| | Sbjct 123182 GAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACG 123123 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| | ||||||||| || | | ||||||| Sbjct 123122 TCCATCTTCAAGTTGCTTT--CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCT 123065 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| ||| ||| | || | ||||||| || |||||||| Sbjct 123064 TCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGG 123005 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || |||||||| ||||| | ||||||| Sbjct 123004 GTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || || || || || ||||||||||| | | ||| | Sbjct 123410 GAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACG 123351 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| | ||||||||| || | | ||||||| Sbjct 123350 TCCATCTTCAAGTTGCTTT--CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCT 123293 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| ||| ||| | || | ||||||| || |||||||| Sbjct 123292 TCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGG 123233 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || |||||||| ||||| | ||||||| Sbjct 123232 GTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || || || || || ||||||||||| | | ||| | Sbjct 123638 GAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACG 123579 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| | ||||||||| || | | ||||||| Sbjct 123578 TCCATCTTCAAGTTGCTTT--CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCT 123521 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| ||| ||| | || | ||||||| || |||||||| Sbjct 123520 TCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGG 123461 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || |||||||| ||||| | ||||||| Sbjct 123460 GTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || || || || || ||||||||||| | | ||| | Sbjct 122954 GAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACG 122895 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| | ||||||||| || | | ||||||| Sbjct 122894 TCCATCTTCAAGTTGCTTT--CCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCT 122837 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| ||| ||| | || | | || || ||| || ||||| Sbjct 122836 TCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGG 122777 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT--TTTAC 152109 || || || || || || | |||||||||||| | |||||| ||||| Sbjct 122776 GTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGATTTAC 122729 Score = 129 bits (142), Expect = 1e-24 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || || || || || ||||||||||| | | ||| | Sbjct 124094 GAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCG 124035 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| || || ||||| | |||||||||||| | | ||||||| Sbjct 124034 GCCGTCTTCAAGTTGCTTT--CCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCT 123977 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| || ||| | |||| |||| || ||| |||||||| Sbjct 123976 TCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGG 123917 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||| || | || || || |||| ||||||| Sbjct 123916 GTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 122 bits (134), Expect = 2e-22 Identities = 163/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| |||| || || | |||||||| || ||||||||||| ||||| || | | ||| Sbjct 124553 CCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGT 124494 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| || || || || | |||||||||||| | | |||| Sbjct 124493 ACGTCCATCTTCAAGTTGCTTT--CCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATT 124436 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || || || ||||||||||| || ||| | |||| |||| || ||| |||||| Sbjct 124435 CCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCA 124376 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| || || | || || || |||| ||||||| Sbjct 124375 AGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 >seq771 Length=410761 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| |||||||| || |||| ||| || | |||||||| || || || ||||||| Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 |||| | ||| || |||| | ||| |||||||| ||||| || || || ||| | | Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | || ||| ||| || ||||| || ||||| |||||||| || |||||||||| Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 152095 AGACCTGCATT 152105 ||| ||||||| Sbjct 280221 AGATCTGCATT 280231 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||| || || |||| ||| || | |||||||| || || || ||||||||| Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| || |||| | ||| |||||||| ||||| || || || ||| | ||| Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || ||| ||| || ||||| || || || |||||||| || |||||||| ||| Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 152097 ACCTGCATTT 152106 | |||||||| Sbjct 283070 ATCTGCATTT 283079 >seq255 Length=939575 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||||||||| || |||||||||||||| |||| | || || || ||||| || | Sbjct 828032 TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCGAGTTGT 827973 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||||| || | | || ||||| || ||||||||||| Sbjct 827972 TTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTG 827913 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||||| |||||||| | ||||| ||||| || || Sbjct 827912 GCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTTCCCAGTC 827853 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||||| |||||| Sbjct 827852 AGAGTTTTCACGAAGATCTGCAT 827830 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||| || || || ||||| | | || || || || || | Sbjct 828430 CAAG-TGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCCA 828372 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | || || || | | ||| ||||| || || |||| Sbjct 828371 GCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCCTGAA 828312 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | || ||| || ||||| ||||| |||||||| | Sbjct 828311 TTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTCC 828252 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||||||||||| |||||| Sbjct 828251 CAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||||||||| || |||||||||||||| |||| | || || || ||||| || | Sbjct 827804 TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCGAGTTGT 827745 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||||| || | | || ||||| || ||||| || || Sbjct 827744 TTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGGATCTTA 827685 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | | |||||| || ||||| ||||| || ||||| || || Sbjct 827684 GCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATGGTTTTTCCTGTT 827625 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || | |||||| Sbjct 827624 AAGGTCTTAACAAAAATCTGCAT 827602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153791588141896