Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq255 181 3e-40 seq188 147 5e-30 seq771 122 2e-22 >seq255 Length=939575 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||||||||| |||||||||||||| ||| || || Sbjct 827377 CAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCCGAT 827436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 827437 ACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAGCAG 827496 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || ||||| ||||||||||| || ||| ||||||| || | Sbjct 827497 CGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAATATT 827556 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||||||||| || ||| | ||||||||||| Sbjct 827557 CAGAAAGAATCAACGCTTCATTTGGTTTTGAGACT 827591 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| || ||||| ||||| || || || ||| || || Sbjct 828227 CAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCGGAT 828286 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||||||||||||||| ||||| || || || ||| Sbjct 828287 ACGATTGAAAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCAACAA 828346 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| |||||||| || || |||||||| ||| | |||||||| | Sbjct 828347 CGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAATATT 828406 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||||||||| || || |||| Sbjct 828407 CAGAAAGAATCAACCCTTCA-CTTG 828430 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||||||||| ||||| ||||| || ||| ||||| Sbjct 827605 CAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCAGAT 827664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || |||||||| || ||||| || |||||| Sbjct 827665 ACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAGCAA 827724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| |||||||| || ||||| || |||| || ||| || Sbjct 827725 CGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACATC 827784 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| ||||| || || || Sbjct 827785 CAAAAGGAATCTACTCTTCA 827804 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || || ||||| || || | || || ||| ||||| Sbjct 827833 CAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCAGAT 827892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || ||||| ||||||||||| || ||||| || |||||| Sbjct 827893 ACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAGCAA 827952 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| |||||||| || ||||| || |||| || ||| || Sbjct 827953 CGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAACATC 828012 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| ||||| || || || Sbjct 828013 CAAAAGGAATCTACTCTTCA 828032 >seq188 Length=1630868 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || |||||||| || || ||| ||||||| Sbjct 122967 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 123026 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||||||||| || || ||||| Sbjct 123027 ACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAG 123086 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||||||| | |||||| | ||||| ||| | Sbjct 123087 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAACATT 123146 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 123147 CAGAAGGAATCCACCCTTCATCTGGT 123172 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || |||||||| || || ||| ||||||| Sbjct 123195 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 123254 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||||||||| || || ||||| Sbjct 123255 ACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAG 123314 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||||||| | |||||| | ||||| ||| | Sbjct 123315 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAACATT 123374 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 123375 CAGAAGGAATCCACCCTTCATCTGGT 123400 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || |||||||| || || ||| ||||||| Sbjct 123423 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 123482 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||||||||| || || ||||| Sbjct 123483 ACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAG 123542 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||||||| | |||||| | ||||| ||| | Sbjct 123543 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAACATT 123602 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 123603 CAGAAGGAATCCACCCTTCATCTGGT 123628 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | || ||||||||||| ||| | || || || || |||||||| ||||| || Sbjct 122731 AAATCATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGG 122790 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || || || || || || || ||| || ||||| || || ||||||||||| || | Sbjct 122791 CATCTGATACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAG 122850 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 | ||||| | | ||||| || ||||| || || ||||||||| | |||||| | |||| Sbjct 122851 ATCAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATT 122910 Query 178096 ATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||| | || || ||||| || || ||||| || Sbjct 122911 ACAACATTCAGAAGGAATCCACCCTTCATCTGGT 122944 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || |||||||| || || ||| ||||||| Sbjct 123651 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 123710 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||||||||| || || ||||| Sbjct 123711 ACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAG 123770 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||||| || ||||| | || | | || ||||| | Sbjct 123771 AGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAATATT 123830 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| || || ||| Sbjct 123831 CAGAAAGAATCTACTCTTCAT 123851 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || |||||||||||||| || || || || ||| Sbjct 123879 CAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATCCGAC 123938 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||||||||||||||| || |||||||| Sbjct 123939 ACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAGCAG 123998 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||| || | |||||| | ||||| ||| | Sbjct 123999 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAACATT 124058 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 124059 CAGAAGGAATCCACCCTTCATCTGGT 124084 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || |||||||| || || ||| ||||||| Sbjct 124107 CAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCAGAC 124166 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||||||||| || || ||||| Sbjct 124167 ACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAG 124226 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||||| || ||||| | || | | || || || | Sbjct 124227 AGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAATATT 124286 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| || || ||| Sbjct 124287 CAGAAAGAATCTACTCTTCAT 124307 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || |||||||||||||| || || || || ||| Sbjct 124335 CAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTCTGAC 124394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| |||||||| |||||||| || |||||||| Sbjct 124395 ACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAG 124454 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || ||||| || || ||||||||| | ||||| | || || || || Sbjct 124455 AGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAATATC 124514 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||||||||||||| || || | ||| | |||| || Sbjct 124515 CAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTTAG 124552 >seq771 Length=410761 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| ||||| || || || Sbjct 280227 CAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCTTCCGAT 280168 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| ||||| ||||||||||| || || Sbjct 280167 ACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGATCAACAG 280108 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || | |||| |||||| || Sbjct 280107 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAACATC 280048 Query 178104 CAAAAAG 178110 || |||| Sbjct 280047 CAGAAAG 280041 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||| || || || Sbjct 283074 CAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTTGAGGCTTCCGAT 283015 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || || || ||||| ||||||||||| || || Sbjct 283014 ACTATAGAAAATGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCGGATCAACAG 282955 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || | |||| ||||| || Sbjct 282954 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAATATC 282895 Query 178104 CAAAA 178108 || || Sbjct 282894 CAGAA 282890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203700724535344