Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq771 87.8 2e-12 seq188 84.2 2e-11 >seq771 Length=410761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| |||||||||||||| | || || | || || ||||||||||| ||||| || Sbjct 280043 TTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 280102 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || |||||||| |||| || | | |||||||| ||| || ||| | Sbjct 280103 AGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTTCA 280162 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | ||| ||| | ||| ||||| | || || || || ||||| || ||||| ||||| Sbjct 280163 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGAAG 280222 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 280223 ATCTGCAT 280230 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| || ||||||||||| | || || | || || ||||||||||| ||||| | Sbjct 282888 CCTTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 282947 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || |||||||| |||| || | | ||||| || ||| || ||||| Sbjct 282948 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | ||| ||| | ||| ||||| | || || || || ||||| || ||||| || | Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 41853 AAATCTGCAT 41862 | |||||||| Sbjct 283068 AGATCTGCAT 283077 >seq188 Length=1630868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| |||||||||||||| || || || Sbjct 124102 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 124043 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||| || || || |||| | ||| ||||| | || Sbjct 124042 AGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 123983 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| | ||||| | |||||| | ||| || Sbjct 123982 ATTCCTTCTTTGT-CTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAAC 123924 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || |||||||| || || | ||| || || || |||||||| Sbjct 123923 TTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292581091200