Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq48246 102 8e-17
seq5449 86.0 6e-12
>seq48246
Length=3565318
Score = 102 bits (112), Expect = 8e-17
Identities = 145/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 16789 GATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT 16848
|| ||||||||||||||| ||||| || || |||||||||| || |||||||| || ||
Sbjct 2531636 GAGTAATCTATCCGCTACGAATTCGATGTACTGGCACATTAGTTTACAGTTCATGCCAAT 2531695
Query 16849 AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAAT 16908
| || || | ||| ||||||||||| ||| || || | || || | ||| ||
Sbjct 2531696 CATTTCAACAGGCAAAGCATCCGTCAAAAACTCTTGTTCAATTTCGACTGCATTCTTTAT 2531755
Query 16909 AATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT--TTAAACATCAGACAT 16966
|| | ||||||||| ||||| | || | ||||| || ||||| || ||
Sbjct 2531756 GATCGACGTAACTCGTTCGCAAGACGGCTTTTG--CACGATGTGCTTGAACATTAGGCAA 2531813
Query 16967 GCGAAATCGCAATGTAATCCCT 16988
|||||||||||||| || ||||
Sbjct 2531814 GCGAAATCGCAATGCAAACCCT 2531835
>seq5449
Length=1839250
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919
||||||||||| || ||||| ||||||| ||| |||||||| |||||||| ||
Sbjct 1186364 CCCACGTATCCATTAGGATCACAGCCATCTATACT-GTATTTATTATTTAAGTAATTA-- 1186308
Query 119920 GACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTAC 119977
| | || || ||| | ||||| | ||| ||||||| | |||||| || |||||||||
Sbjct 1186307 GCCCATTCCAAAGCAATCTCAGGTGATTCGGTCCATTCTAATATTTTCTTCGCCCAGTAC 1186248
Query 119978 ATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCAT 120037
|| | ||| | || ||||| || || ||||||||| || | || ||||||
Sbjct 1186247 ATCCTTAAAAAGCCGTGCATCTTTCCCATTGTTACCATTTGATTCTGAGATGCATTCCAT 1186188
Query 120038 AAGGGATCGTGTGT 120051
||| ||||| ||
Sbjct 1186187 AAGTCGTCGTGAGT 1186174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517218459426240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |