Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq48246 102 8e-17 seq5449 86.0 6e-12 >seq48246 Length=3565318 Score = 102 bits (112), Expect = 8e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 16789 GATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT 16848 || ||||||||||||||| ||||| || || |||||||||| || |||||||| || || Sbjct 2531636 GAGTAATCTATCCGCTACGAATTCGATGTACTGGCACATTAGTTTACAGTTCATGCCAAT 2531695 Query 16849 AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAAT 16908 | || || | ||| ||||||||||| ||| || || | || || | ||| || Sbjct 2531696 CATTTCAACAGGCAAAGCATCCGTCAAAAACTCTTGTTCAATTTCGACTGCATTCTTTAT 2531755 Query 16909 AATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT--TTAAACATCAGACAT 16966 || | ||||||||| ||||| | || | ||||| || ||||| || || Sbjct 2531756 GATCGACGTAACTCGTTCGCAAGACGGCTTTTG--CACGATGTGCTTGAACATTAGGCAA 2531813 Query 16967 GCGAAATCGCAATGTAATCCCT 16988 |||||||||||||| || |||| Sbjct 2531814 GCGAAATCGCAATGCAAACCCT 2531835 >seq5449 Length=1839250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919 ||||||||||| || ||||| ||||||| ||| |||||||| |||||||| || Sbjct 1186364 CCCACGTATCCATTAGGATCACAGCCATCTATACT-GTATTTATTATTTAAGTAATTA-- 1186308 Query 119920 GACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTAC 119977 | | || || ||| | ||||| | ||| ||||||| | |||||| || ||||||||| Sbjct 1186307 GCCCATTCCAAAGCAATCTCAGGTGATTCGGTCCATTCTAATATTTTCTTCGCCCAGTAC 1186248 Query 119978 ATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCAT 120037 || | ||| | || ||||| || || ||||||||| || | || |||||| Sbjct 1186247 ATCCTTAAAAAGCCGTGCATCTTTCCCATTGTTACCATTTGATTCTGAGATGCATTCCAT 1186188 Query 120038 AAGGGATCGTGTGT 120051 ||| ||||| || Sbjct 1186187 AAGTCGTCGTGAGT 1186174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517218459426240