Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq36416 114 9e-21 >seq36416 Length=241146 Score = 114 bits (126), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || |||||||||| ||| ||||| ||||| | ||||| | ||| || | Sbjct 77813 CTTTGTATTCCGCGCCGAAATGCCGCCATTGAAACCCATAAATTGGTCCCAAATCGCCCT 77872 Query 102093 CATCTCTGTCATAAAAACC--AAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCA 102150 | ||||| || ||| || ||| | |||| || || | || | || |||||||| Sbjct 77873 CCTCTCTATCCGTAAACCCGCAAGCGT--CTAAGAACGAACGCGAGGCGTTTGCATCCCA 77930 Query 102151 AATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAA 102210 || | ||||| | || | ||||||| | || ||||||||||| ||||| || Sbjct 77931 TATACGAACGCCTTTGTCGGACAACTCTTTGGCATTCGTCGATCCTCTGATGAACCATAA 77990 Query 102211 CAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||| || || || ||| ||||||| || ||||| || || || | |||||| Sbjct 77991 CAATTCCTCTACCACGCCTTTCCAAAACACCCTCTTCGTGGTCAATAATGGAAA 78044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361028561788568