Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 120 4e-22
seq48246 104 3e-17
seq2114 87.8 2e-12
>seq10733
Length=171697
Score = 120 bits (132), Expect = 4e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196
||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| ||||
Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751
Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256
||| ||||| | ||| ||||||||||| | || || || || || || || ||||||||
Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811
Query 53257 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 53316
|| | | ||| ||| |||| |||| | | ||| || ||||| | | | ||||
Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871
Query 53317 ATTCCAAAGATCCG 53330
|| ||| | |||||
Sbjct 125872 ATCCCATAAATCCG 125885
Score = 111 bits (122), Expect = 2e-19
Identities = 219/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154
|| || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| ||
Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693
Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214
|| | | | |||| || | || |||||||| ||||| | |||| ||| || ||
Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753
Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274
||||| |||| | ||| |||| | |||||| ||| ||||| || | || ||| |
Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811
Query 54275 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATCCCCCCTGCCATTTTAGA 54330
| || || || | ||| | || |||| || || || || || || ||||
Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869
Query 54331 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 54389
|| | ||| |||| |||||| |||||||| || || | |||||||| || ||| |||
Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929
Query 54390 TAAGTAGAAAACAGCT 54405
||| |||||||| ||
Sbjct 126930 TAA-CAGAAAACAACT 126944
Score = 105 bits (116), Expect = 8e-18
Identities = 172/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747
|||||||||| || | ||||| || |||| ||| || ||||| || |||| | | |
Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136
Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807
|||||||| || || || || | |||||| || || || ||||||| |||||| ||||
Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196
Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867
| || ||| || |||||||||||| || || || || || ||||||| ||||
Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256
Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 53927
| | || ||| |||| | | | | || | ||| ||||||||| || ||
Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCAT 126316
Query 53928 TTTCGTAT 53935
||||||||
Sbjct 126317 TTTCGTAT 126324
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998
||||||| |||||| || || |||||||||| | || |||||| |||||| |||
Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456
Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058
||||| || ||| | || | || |||||||||||||| |||||||| | |||
Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516
Query 54059 AGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102
| | | || |||| ||||| | ||||||||||| || |||||
Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560
>seq48246
Length=3565318
Score = 104 bits (114), Expect = 3e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678
||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738
||| |||||| | | ||||| ||||| | ||||||||| || || || | | || |
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627
Query 24739 TTGGTTC 24745
||||||
Sbjct 2532628 ATGGTTC 2532634
>seq2114
Length=466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443
||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| |||
Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320
Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503
| |||||| | ||||| || || | |||| || | ||| || || || ||||||
Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380
Query 53504 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553
||||| ||| || |||| || ||||| | ||||||| ||||||||
Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593346308576640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |