Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 89.7 4e-13
seq36416 87.8 2e-12
>seq16708
Length=1145218
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || |||| |||||||| ||||| || || ||| ||| || | |
Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| ||| | | || | ||| || ||| || ||||| || | || || ||
Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCA 1010441
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTAC 29138
|||| |||| ||||| || || |||||||| |||||| | | ||| | | ||||||
Sbjct 1010440 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCT--CTGATTAC 1010383
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||| ||||||||||| |||||||| |||| ||||| | |||| ||
Sbjct 1010382 AATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGG 1010333
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/145 (74%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || |||||||| | || || |||||| || | ||||| || || |||
Sbjct 1011159 AAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAACGATTGATCTTCGCTGGAAAA 1011100
Query 29106 CAACTGGAAGATT--CCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163
||||| |||||| | | ||| | | ||||||||||| ||||||||||| |||||||
Sbjct 1011099 CAACTCGAAGATGGACGCACACTCT--CTGATTACAATATACAGAAGGAATCCACTCTTC 1011042
Query 29164 ACATGGTGTTACGATTACGAGGAGG 29188
| |||| ||||||| |||| ||
Sbjct 1011041 ATCTGGTTCTACGATTGAGAGGCGG 1011017
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || || || ||||| || || ||| ||| || | |
Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | | ||| |||||| || |||||||| | || || |||
Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011352
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACA 29139
||| || | ||||| || || |||||||| |||||| | | ||| | | |||||||
Sbjct 1011351 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCT--CTGATTACA 1011294
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||| ||||||||||| |||||||| |||| ||||| | |||| ||
Sbjct 1011293 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGG 1011245
>seq36416
Length=241146
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|||||||||||||| || ||||| ||||||||| |||| ||| | |||| || |||||
Sbjct 80542 GATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGAT 80601
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| || || || ||||| || || | || |||||||||| || |||| ||
Sbjct 80602 TATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGG 80654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428072017594040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |