Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16708 118 1e-21 seq48246 109 6e-19 seq21718 91.5 2e-13 >seq16708 Length=1145218 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || ||||| || |||||||||||| | || ||||||||| | Sbjct 654042 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTC 653983 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || | ||||| | ||||| ||||| || || | || || Sbjct 653982 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 653923 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| | || || | || || || || ||||| Sbjct 653922 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAA 653863 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| ||||||| ||||| || Sbjct 653862 CATCCAAAAGGAGTCCACGCTTCATCTGGT 653833 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || ||||| || |||||||||||| | || ||||||||| | Sbjct 654726 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654667 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || | ||||| | ||||| ||||| || || | || || Sbjct 654666 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 654607 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| | || || | || || || || ||||| Sbjct 654606 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAA 654547 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| ||||||| ||||| || Sbjct 654546 CATCCAAAAGGAGTCCACGCTTCATCTGGT 654517 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| ||| | || |||||||| || ||| |||| || || || | Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | |||||| ||||||| |||||||| || || || ||||||| Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1010213 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || ||||| || || || | | || || ||| || || Sbjct 1010212 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAA 1010153 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || || ||||| || | || |||| ||||| Sbjct 1010152 CATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGG 1010105 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || ||||| || || ||| |||| || || || | Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | |||||| || |||| ||||||||||| || || ||||||| Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCA 1010441 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||| |||| ||| || ||||| || || || | |||||| ||| || ||||| Sbjct 1010440 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACAA 1010381 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| |||| || ||||| || | || |||| ||||| Sbjct 1010380 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGG 1010333 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || |||||| | || || || || ||||| | || ||||| || | Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || || | |||||| ||||||| ||||||||||| || || |||| | Sbjct 1010728 TGATACGATTGAGAATG-TCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATC 1010670 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | |||||| | |||| || || || |||||||| || | ||||| ||| || |||| Sbjct 1010669 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACA 1010610 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || |||||||| |||| || ||||| || | || ||||| || || Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGG 1010561 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || ||||| || |||||||||||| | || ||||||||| | Sbjct 654270 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654211 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || | ||||| | ||||| ||||| || || | || || Sbjct 654210 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 654151 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| ||||| |||||||| || | || || | |||||||| Sbjct 654150 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAA 654091 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 654090 CATTCAGAAGGAGTCTACTCTTCAT 654066 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || |||||||||||| | || |||||||| | Sbjct 655181 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTCA 655122 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | || | ||||| | || || || || || || | || || Sbjct 655121 GACACGATCGAAAACG-TGAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCA 655063 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| || || || || | || || ||| || ||||| Sbjct 655062 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGTACTCTCTCTGATTACAA 655003 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| ||||||| ||||| || Sbjct 655002 CATCCAAAAGGAGTCCACGCTTCATCTGGT 654973 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || || ||||| | || ||||| || | Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||| | || | ||||||| |||||||| || || || ||||||| Sbjct 1010044 CGATACCATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGACCA 1009985 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || ||| | || || | ||||| || || || || Sbjct 1009984 GCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAA 1009925 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 1009924 CATCCAGAAGGAGTCGACCCTTCATCTCGT 1009895 >seq48246 Length=3565318 Score = 109 bits (120), Expect = 6e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 |||||||| || |||| | |||| || || || |||||| | || || ||| Sbjct 2532422 GACTGGGATATTTTAAACGCTAGCGAGAAACACTTTATATCGCACGTATTAGCATTCTTC 2532363 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCA 116829 || || |||||| ||||| || |||||||| || || || ||| || || || || || Sbjct 2532362 GCGGCATCCGACGGTATCGTTAATGAGAATCTCGTAGAACGATTTAGC-CAAGAAGTTCA 2532304 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 ||| | ||||| || || ||||| |||||||| | || ||||||||||||||||| || Sbjct 2532303 AGTGACAGAGGCACGCTGTTTCTATGGCTTTCAAGTAGCGATGGAGAACGTGCACTCAGA 2532244 Query 116890 AATGTATTC 116898 |||||| || Sbjct 2532243 AATGTACTC 2532235 >seq21718 Length=958615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| ||||| || ||||| ||||| || ||| |||| || || || || Sbjct 51270 ATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCC 51211 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | ||| |||| ||||||||||| ||||| | || || Sbjct 51210 GACACTATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCACCCGATCAA 51151 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || || |||| || | |||||||| ||| || ||| Sbjct 51150 CAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAAC 51091 Query 40870 ATCCAGAA 40877 || ||||| Sbjct 51090 ATTCAGAA 51083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514893529943680