Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq36416 105 5e-18 >seq36416 Length=241146 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| || || ||||||| |||||| || ||||||| ||||| | || || || ||| Sbjct 77818 TATTCCGCGCCGAAATGCCGCCATTGAAACCCATAAATTGGTCCCAAATCGCCCTCCTCT 77877 Query 97462 CTATCACAGAAACC---AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATG 97518 ||||| | ||||| |||| | |||| | || | || | ||||||||||| || Sbjct 77878 CTATC-CGTAAACCCGCAAGCGT--CTAAGAACGAACGCGAGGCGTTTGCATCCCATATA 77934 Query 97519 TGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAAT 97578 | || || | | | ||||||| | || ||||||||||| ||||| |||||| Sbjct 77935 CGAACGCCTTTGTCGGACAACTCTTTGGCATTCGTCGATCCTCTGATGAACCATAACAAT 77994 Query 97579 TCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 || || || || ||| ||||||| || ||||| || || || | ||||| Sbjct 77995 TCCTCTACCACGCCTTTCCAAAACACCCTCTTCGTGGTCAATAATGGAAA 78044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346570277887760