Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5449 129 9e-25 seq16708 120 5e-22 seq36416 96.9 5e-15 >seq5449 Length=1839250 Score = 129 bits (142), Expect = 9e-25 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 202868 ccAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || || |||||||| ||||||| ||||||||| ||||||| |||||| | Sbjct 1186364 CCCACGTATCCATTAGGATCACAGCCATCTATACTGTATTTATTATTTAAGTAATTAGCC 1186305 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || || ||||||| ||||||||||||||||| || ||||| ||||| Sbjct 1186304 CATTCCAAAGCAATCTCAGGTGATTCGGTCCATTCTAATATTTTCTTCGCCCAGTACATC 1186245 Query 202988 CTTAAATATCCATGCAT-TTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAA 203046 |||||| | || ||||| ||| |||| | || |||||| || || |||||||||||||| Sbjct 1186244 CTTAAAAAGCCGTGCATCTTTCCCATTGTTAC-CATTTGATTCTGAGATGCATTCCATAA 1186186 Query 203047 ATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATC 203106 | ||| ||||| |||||| | ||| |||| |||||||| || || |||| Sbjct 1186185 GTCGTCGTGAGTCTGACAATTTTCTAACTGACTTAAAGAATATATATACTTCCTCTTATC 1186126 Query 203107 ATT 203109 || Sbjct 1186125 CTT 1186123 >seq16708 Length=1145218 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | |||||||| || ||||| | ||| |||| || Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | || || |||||||| |||||||| || || || || || Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || || || || ||||||||| | || ||| | || ||| | ||||| || Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1010837 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||||||||| ||| ||||| | || | || | |||||||| || Sbjct 1010836 TATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAAT 1010786 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| ||||||| | ||||||||||| ||||| | ||| |||| || Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || |||||||| || |||||||| || || || || || Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1010213 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || ||||||||| | || ||| | |||| | |||||||| Sbjct 1010212 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAA 1010153 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || || ||||| || || | ||| ||||| |||| Sbjct 1010152 CATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACG 1010117 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || || ||||| || | || | || || Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| ||||||||||| |||||||| || ||||| || || Sbjct 1010044 CGATACCATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGACCA 1009985 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || || || ||||| || ||||| ||| | || ||| | |||||||| Sbjct 1009984 GCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAA 1009925 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || || || || || || | ||| | ||| | ||| | ||||| |||| Sbjct 1009924 CATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCCGAGGAGGTA 1009875 >seq36416 Length=241146 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || ||||| ||||||||||| || |||||||| || |||||||| |||||| | | Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| | |||||||| || ||||| || || || || |||||||| ||||| || | Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648 Query 124760 AGGTGG 124765 ||| || Sbjct 80649 AGGCGG 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754978476262400